PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0005s0810.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 23875.3 Da PI: 8.849 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.3 | 2e-19 | 7 | 52 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll+++v ++G+++W+ Iar ++ gR++k+c++rw + SapurV1A.0005s0810.1.p 7 KGPWSPEEDALLKHLVIKHGPRNWTMIARAVP-GRSGKSCRLRWCNQ 52 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 25.1 | 4e-08 | 61 | 83 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 W++Iar + gRt++ +k++w++ SapurV1A.0005s0810.1.p 61 EWAAIARLLD-GRTDNAIKNHWNS 83 5*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.201 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-17 | 6 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 6 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-18 | 7 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.14E-26 | 7 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.93E-16 | 9 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-9 | 60 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-5 | 61 | 83 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.796 | 62 | 85 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MNCYQVKGPW SPEEDALLKH LVIKHGPRNW TMIARAVPGR SGKSCRLRWC NQLSPVVEHR 60 EWAAIARLLD GRTDNAIKNH WNSRLKRKYA DLIVNGGMVS EDGVRDKSAK SVLSSSVLET 120 AYTPSGSEVS DAGLLGTSLL LVQENVPVVE SVISNNADVS TELSLSVAGM KSGQLGRDWV 180 GNKGLLAGDA EKTTTLSPEL LAVIQEMIRK EVRNVMAGSG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 6 | 88 | 6 | 107 | B-MYB |
1gv2_A | 1e-24 | 6 | 88 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0005s0810.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298748.1 | 1e-129 | transcription factor MYB44 | ||||
Swissprot | O23160 | 1e-48 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | B9GHS7 | 1e-128 | B9GHS7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30750.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-48 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0005s0810.1.p |
Publications ? help Back to Top | |||
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