PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0002s0660.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 281aa    MW: 30850.4 Da    PI: 9.7174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0002s0660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-077496225
                            -S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                            kt lC+ f+  G+C++G++C  aH
  SapurV1A.0002s0660.1.p 74 KTQLCMKFRT-GQCSHGSKCLSAH 96
                            9*********.**********999 PP
2zf-CCCH18.43.8e-06118140426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              +Cr f  +  C yG++C+F H+
  SapurV1A.0002s0660.1.p 118 NPCRMFNSGNGCTYGNKCRFLHV 140
                             5899999988************5 PP
3zf-CCCH39.11.2e-12176202127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +kt+lC+++  tG C+yG  C+FaHg+
  SapurV1A.0002s0660.1.p 176 KKTRLCNNWELTGGCPYGKVCQFAHGQ 202
                             59***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.8927299IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-57298IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-57496IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-774103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173114142IPR000571Zinc finger, CCCH-type
SMARTSM003560.044115141IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4117140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-6119139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-15171206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92175203IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6175202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-9175206IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9176202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSDSAPACKY FTFSTQMVHS CSHCSTQSKG FETVSNIGNL LRKKPRICEN NARPSSKMLV  60
GKSNAMMTGG YSSKTQLCMK FRTGQCSHGS KCLSAHAVCD LRKALPKLRR VLANEDKNPC  120
RMFNSGNGCT YGNKCRFLHV GPENFKKHLG QYCESSAISI GTTGTASSGV HKKGFKKTRL  180
CNNWELTGGC PYGKVCQFAH GQQELEKSDG NIALASGIVP TEASKSLLMG KDDIGSNHKH  240
EAQAKHCMFK WKAIKKIRGI YADWIEDMHL LHSSLDRVEN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0002s0660.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040025.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A2K2B2B91e-176A0A2K2B2B9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06010.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-33C3H family protein