PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0001s0300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 453aa MW: 50947.7 Da PI: 6.3633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 71 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+WvAeIr+p++ + k+ r +lg+f ta+eAa a++ a++ ++g SapurV1A.0001s0300.1.p 71 RYRGVRQRT-WGKWVAEIREPVKKCglmnKKgSRLWLGTFSTAFEAASAYDYAARLIYG 128 59****999.**********766333665446*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-27 | 71 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.9E-29 | 71 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 71 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-18 | 71 | 137 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-10 | 71 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.787 | 71 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MEDSLRQSSS LGFSSKNRKR WKRSRNGCDS IEDTLAKWKK HNKLQISKVP GKGSKKGCMK 60 GKGGPENMNF RYRGVRQRTW GKWVAEIREP VKKCGLMNKK GSRLWLGTFS TAFEAASAYD 120 YAARLIYGPN AILNFPDCPV ESGVHLNNMS SSITATESSS TESRKALDSY EDNKVDKSKM 180 NHCGYREGNN PSGFSRICAV DESEEAVDRF RVAESSDREL KAVEWNLTDD WKSSHHIEAE 240 SPVLREEMDG ELAEIFRSWG CNGISNRYGL LQNETENVEY KKLKNEVVES SMSTRLDEFV 300 DSDNDMRTDH KPIYDVEKPL MREAAAGEEF SGLKFSNYNH SEAAHDYMNP GLCNQEIDIK 360 PFIQDISVLK GGMNYGYDPR KAGSPSHVQG GRPSTLSCHW QTPSTNLPWS SSYFQEADLG 420 RGWNVDLSQQ DFNGGLVGEP GMPDPWCPDL QF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-16 | 72 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0001s0300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155960 | 0.0 | EF155960.1 Populus trichocarpa putative DRE-binding protein 4 (DREB4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459148.1 | 0.0 | uncharacterized protein LOC7468071 isoform X1 | ||||
TrEMBL | A0A2K2A017 | 0.0 | A0A2K2A017_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s10510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17110 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 2e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0001s0300.1.p |