PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026211-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 133aa MW: 15070.6 Da PI: 8.4464 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 15 | 37 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H SMil_00026211-RA_Salv 15 FPCSYCSRKFHSSQALGGHQNAH 37 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.7E-6 | 13 | 42 | No hit | No description |
Pfam | PF13912 | 3.0E-6 | 15 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.572 | 15 | 42 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 17 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MESSANKAED APKFFPCSYC SRKFHSSQAL GGHQNAHKKE RSAAGKSKRG ASDYALMASP 60 PLINYPIGIQ YGGFGSFQEV ALYHQYNVAH AHEQRSRVRC VDDYSAQPYP YAYGDYHYET 120 RHRDHNLDLS LHL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D8Y2F2 | 1e-38 | A0A4D8Y2F2_SALSN; Uncharacterized protein | ||||
STRING | XP_008365938.1 | 2e-16 | (Malus domestica) | ||||
STRING | Migut.D00516.1.p | 2e-16 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7969 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 4e-14 | C2H2 family protein |