PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024679-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 33658.7 Da PI: 5.4846 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33 | 1.1e-10 | 175 | 222 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq SMil_00024679-RA_Salv 175 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 222 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.14E-17 | 169 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-10 | 169 | 226 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-18 | 171 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 171 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-8 | 175 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDPPLVNEAS FTAAANPNSY SLAGLLSFSG SGGLGLRMGN LGRSGGGDAS LEESTVTEQS 60 GSGNGGGPKR RRDVGSSFDD DSSKIVSTSS ANQDVVYTVL LELDNGCIRE RERVYIISVL 120 IRMPNEQKLF DSGDQLKTET ETHSGSSKPV EEKSKPEPPK DYIHVRARRG QATDSHSLAE 180 RARREKISER MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRLS 240 PTLEGFPSKD LTNVVSLEYL VDAKFLGSQL AGPAFDANGM IYGPQTPGVY ARGSQAEWLH 300 MQVGGGFERS T |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257474 | 0.0 | KP257474.1 Salvia miltiorrhiza clone 41 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071749.1 | 1e-120 | transcription factor bHLH79-like isoform X2 | ||||
Swissprot | Q9LV17 | 2e-71 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A0H3YB51 | 0.0 | A0A0H3YB51_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.I00100.1.p | 1e-108 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1287 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 4e-65 | BIG PETAL P |
Publications ? help Back to Top | |||
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