PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022792-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 270aa    MW: 29803.4 Da    PI: 8.1564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022792-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07156202655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            n +   RR++i +++  L++l+P +   ++    Ka +L + ++YI+sLq
  SMil_00022792-RA_Salv 156 NNNVMARREKISERMRILQDLVPGC---NKVSICKALVLDEIINYIQSLQ 202
                            556667*******************...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.138150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-5155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-7158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-12161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-8162206No hitNo description
Gene3DG3DSA:4.10.280.102.4E-12163218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
LEKHCVCVCA GSSHCTPLRT VLTQQPALFQ GKKIHSICPL PSYTFTHPPV SIHSCSSARP  60
DRRNSLPPPS MDPQGPAMMN EGGVYNFAEI WPAFQMNATA TSYGLGLDPM VMDQRSNHSP  120
PNHNSRKRRE DDDCVKGGAS TSNSNGNSNN TTNNNNNNVM ARREKISERM RILQDLVPGC  180
NKVSICKALV LDEIINYIQS LQRQVEFLSM KLEAVNARVS IDGYPSKDFS QQTFDSSGMA  240
YGSQSTREYG RGSSPEWLHM QIGGGFERSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575380.0KP257538.1 Salvia miltiorrhiza clone 105 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847721.11e-100PREDICTED: transcription factor bHLH79-like isoform X1
TrEMBLA0A0H3Y8Z41e-124A0A0H3Y8Z4_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.L01368.1.p1e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-54BIG PETAL P