PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020648-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 238aa MW: 27172.1 Da PI: 8.6898 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.8 | 1.2e-28 | 8 | 62 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt+eLH+ F +av+q+GG+++AtPk il++m ++gLt+ hvkSHLQkYR+ SMil_00020648-RA_Salv 8 KERLKWTKELHDLFEKAVNQIGGPDRATPKGILKAMAIPGLTIFHVKSHLQKYRM 62 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 5 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.67E-17 | 6 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-22 | 8 | 62 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-8 | 10 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.8E-18 | 95 | 139 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGSHRSSKER LKWTKELHDL FEKAVNQIGG PDRATPKGIL KAMAIPGLTI FHVKSHLQKY 60 RMSVFTREED HTKGKLERRS VSEMLPNFCA LSGAQLNEAL LIQMEAQRRL SDQLEVQKSL 120 KMKIEAQGRF LDKIMEEYKN RSPAGTKPYS PILSLPSLSD ESDSDVEDVS EISSKEDFQP 180 PKRIKIQQHH NLPCFNLDSH HLNLFSVDGI TNQELAFPWV DRALSPSPLL GMYNHLNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-20 | 8 | 65 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077547.1 | 1e-114 | myb family transcription factor PHL7 | ||||
Refseq | XP_011077550.1 | 1e-114 | myb family transcription factor PHL7 | ||||
Refseq | XP_020549678.1 | 1e-114 | myb family transcription factor PHL7 | ||||
TrEMBL | A0A022QJI3 | 1e-105 | A0A022QJI3_ERYGU; Uncharacterized protein | ||||
TrEMBL | A0A4D8Y7K5 | 1e-104 | A0A4D8Y7K5_SALSN; Uncharacterized protein | ||||
STRING | Migut.L02017.1.p | 1e-106 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10101 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 7e-47 | G2-like family protein |