PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019580-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 305aa MW: 33816.4 Da PI: 8.3023 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 243 | 265 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L+ H + H SMil_00019580-RA_Salv 243 VCPQCKLRFSSVGALVDHVEKvH 265 6*****************99888 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.3e-05 | 277 | 299 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H SMil_00019580-RA_Salv 277 VCPKCSKGFRDPVKLVEHVEReH 299 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 1.18E-11 | 22 | 76 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 2.4E-11 | 27 | 72 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.687 | 29 | 74 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.6E-13 | 32 | 70 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 1.1E-4 | 32 | 71 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 2.9E-11 | 109 | 176 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 3.01E-9 | 112 | 164 | No hit | No description |
PROSITE profile | PS51039 | 8.114 | 117 | 170 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.0E-8 | 120 | 159 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.021 | 120 | 161 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.065 | 242 | 265 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 244 | 265 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.642 | 276 | 304 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.5 | 276 | 299 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 278 | 299 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
LFFQSQSRIR GFAFFDLNGM GTPAIPNLGK HCSVDDCRQI DFLPFTCDCC QQVFCLDHRS 60 YSRHQCPKAS KNDVTVVVCP LCAKGVRLIP EEDPNITWES HVNVECDPSN YEQATKKRKC 120 PVPRCKEMLT FSNTIKCRDC NIDHCLKHRF GADHSCPGPR KPEPSFQFMG FLNKSRKDEP 180 KQAAATSSSK WASSFLNLAS SVRASAEAGM TKLSNEFNQA LSTNGGAQNS SSTSTSTSHQ 240 VEVCPQCKLR FSSVGALVDH VEKVHERHGV MKATLDVCPK CSKGFRDPVK LVEHVEREHG 300 GVSKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075237.1 | 1e-172 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Swissprot | Q8VZ42 | 1e-122 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A4D8Y6M0 | 0.0 | A0A4D8Y6M0_SALSN; Uncharacterized protein | ||||
STRING | Migut.J01765.1.p | 1e-161 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5311 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-122 | C2H2 family protein |