PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017291-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 275aa    MW: 31015.2 Da    PI: 8.4957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017291-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05117139223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C+ C+++F+++++L  H +  H
  SMil_00017291-RA_Salv 117 SCSVCSQVFPTSHLLSIHVSEaH 139
                            6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355589114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091114IPR007087Zinc finger, C2H2
SMARTSM003552.4116139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118139IPR007087Zinc finger, C2H2
SMARTSM003550.37154179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAMEVEAEVS GTGLNFPLLK PVRRRFGPDA LFFEAGNIER ELLAKQVALD ITDHRTEIQV  60
PKPTEATMAP SDEEKQKIRS MEDWGSSEAF CPIVGCGACL QSLEDFEDHY IARHMASCSV  120
CSQVFPTSHL LSIHVSEAHD SFFQAKVARG FAMYECLVEG CDAKLKSYKS RQQHLVDKHK  180
FPSSFEFFKK SRPSKKQRQK TQRKQAMHKT EDASTAMQVD QENIDSLVSA VSRLSTSESP  240
SSISFGRRHT RGLTFVPRAI QKEKRPGQSS EQLKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200KKQRQKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097276.11e-139zinc finger protein 511
TrEMBLA0A4D8ZH031e-152A0A4D8ZH03_SALSN; Uncharacterized protein
STRINGMigut.K01467.1.p1e-134(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-79zinc ion binding;nucleic acid binding;zinc ion binding