PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016022-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 733aa    MW: 79367 Da    PI: 6.3277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016022-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07309329526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ G C++Gd C +aHg
  SMil_00016022-RA_Salv 309 PCPDFRK-GACRRGDMCEYAHG 329
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.78E-1731162IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-1436159No hitNo description
Gene3DG3DSA:1.25.40.204.2E-1736161IPR020683Ankyrin repeat-containing domain
SMARTSM0024846003766IPR002110Ankyrin repeat
PfamPF127964.6E-1145153IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2384114IPR002110Ankyrin repeat
PROSITE profilePS5029714.87584159IPR020683Ankyrin repeat-containing domain
PRINTSPR014151.1E-585100IPR002110Ankyrin repeat
SMARTSM002480.0012119151IPR002110Ankyrin repeat
PROSITE profilePS5008812.262119154IPR002110Ankyrin repeat
PRINTSPR014151.1E-5138152IPR002110Ankyrin repeat
SMARTSM003564.0E-6304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309331IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035664339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MCSGPEQSNP NSCTTQGAAI NQSNKKDLNN LSVETDDSLS SLLEFAANND IESFKRLIEV  60
DLSVVDEAGL WYVRKKGSKQ ISPEERTPLM VAATYGSVDV LKLIVALPEV DLNKSCGGNK  120
WTALHCAAFG GSIHAFDVVK LLLSAGADPN IEDSRGLRPG DVIVVPPKLP GAKAALEDLL  180
MNNIYDGSIG ECNLRVNISG SNASSPVLSS SPESRSTCSL LDSVSSPSAP KFVDPAANSV  240
SEKKQYLVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARQVCFFAH  360
TQEELRPLYV STGSGVPSPR SVASTASFMD LAAALSLLPG SPTSQSVMSP SAFNQTLSPT  420
ANGMSHSSSG AWTQPNVPTL SLPGSNLQSS RLRSSLSARD IPPEDLNMLQ NYDSQQLILN  480
DMACFSQPRP NSAMLGSGRS QATLTPSNLE ELFSAEIASS PRLSDQAAAY GVFSPSHKSA  540
VLNQFQPQQN ILSPINTNVF SPRNVEHPLL QASFGVSSPR MSPRSLEPAS PMSARLSDFA  600
QRERQQQQQM RSISSRELGS NCASVVGSPA SAWSKWRPAN GKVDWSVGAD HEGGLKRSSS  660
FDRRVADGEE PDLSWVQSLV KESPPEMMEK PAAPSSGAAP SGECLKPHPQ TDSVDNTVLG  720
AWLDQMRLDQ LIV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087691.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A4D9C0460.0A0A4D9C046_SALSN; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
STRINGXP_009599703.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]