PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015218-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 328aa    MW: 37116.3 Da    PI: 10.3724
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015218-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.8e-14157199345
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                            i +++ r  tf kR+ g++KK +EL +LCd+e++ i++ ++g+
  SMil_00015218-RA_Salv 157 IADDRTRRETFKKRKSGLFKKLNELKTLCDVEACGIVINEDGT 199
                            778899999*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF886971.57E-1253152IPR015947PUA-like domain
PfamPF021901.0E-654243IPR003111ATP-dependent protease La (LON), substrate-binding domain
PROSITE profilePS5006615.264147198IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-13147206IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-7149169IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-19150239IPR002100Transcription factor, MADS-box
CDDcd002662.77E-21150230No hitNo description
PfamPF003191.4E-15157199IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-7169184IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-7184205IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0004176Molecular FunctionATP-dependent peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEKLVVQGLG RRDTPGKGDG EIVANPHSSF ASPLTSPFRR RRRRFQLRAS SLVLPLLPFP  60
IDQVLIPSEV KSLHLYEARY IALLEESLFK KNKLFVHFVL DPIGLGGTSI EASFAARYGC  120
LVTIEKVEKL EIGALVLIRG VGRVKLLEFK KIKYELIADD RTRRETFKKR KSGLFKKLNE  180
LKTLCDVEAC GIVINEDGTQ SEVWPSMPAT SQVVRRFLNI PSSSQTNNMV GQSGFLRQNL  240
SRISKNLDKE TRKVQFLEKE LLLADCLTKE QVDVSNSKEL HEMLRLLERK IELVDRKIAD  300
VGPSSSIMTT RARGRNCELY HGKGKQPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843RRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8YJV51e-151A0A4D8YJV5_SALSN; Uncharacterized protein
STRINGMigut.C01325.1.p2e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA858166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-21AGAMOUS-like 36