PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011129-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 274aa    MW: 28739.3 Da    PI: 6.6885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011129-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-10154198554
                            HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            h+++Er RR+ri +++  L++l+P+ +      K + a++L + v+Y+k L
  SMil_00011129-RA_Salv 154 HSIAERLRRERIAERIRALQDLVPSvN------KTDRAAMLDEIVDYVKFL 198
                            99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.145149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
LKSVMSNNPG EAPSDDFLEQ ILGYQNYAAG ADSTLVGNEG PSPAMLLQLG SGDGSAHLGG  60
VGGMGIGIGG GYGVGGGGGG FPLGLSLEQG KGGYNDASGS GKRFHRDDFV DSRGAAMKGG  120
FHGQPMMNTV QAAPHPPGIR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQDLVPSVN  180
KTDRAAMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDIPISSVEE ECSDGGRAQP  240
AWDKWSNDGT ERQVAKLMEE NVGAAMQFLQ SKAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574350.0KP257435.1 Salvia miltiorrhiza clone 2 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831677.11e-149PREDICTED: transcription factor UNE12
SwissprotO227681e-101UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0H3YC170.0A0A0H3YC17_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D00370.1.p1e-148(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.23e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]