PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010946-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 309aa MW: 34239.7 Da PI: 6.3939

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010946-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.5e-10	175	223	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq SMil_00010946-RA_Salv 175 SNHSLAERVRRERISERMRLLQELVPGC----DKITGKAVVLDEIINYVQSLQ 223 58***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-17	169	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.12E-11	170	227	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-16	171	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.656	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-7	175	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.9E-10	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVFSYSCILM HIYSQQNLVL SAPTSVPILP GSQKGQEFLQ EKRHNRGKFK CCSSIMAADN 60 VAEMSIFSKV DHFYSCGWDA MVLGNETATF LENQTKLNSS DSGLAESMPM ITSVGEVDES 120 CSHPDFFQDR CQSPSNAKRK RNVSSSKNSK VDEKQTVDAE EKFVHIRAKK GQATSNHSLA 180 ERVRRERISE RMRLLQELVP GCDKITGKAV VLDEIINYVQ SLQQQVEFLS MKLATVDPEL 240 NLDIQPTLST HLRGSNGVGG TSSSCSQGNV PSLPQDLWNN ELQSVLQTRF YPCSSMSGLL 300 GNGLSEMEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257434	0.0	KP257434.1 Salvia miltiorrhiza clone 1 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074329.1	6e-67	transcription factor bHLH74
Swissprot	Q6NKN9	2e-49	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A0H3YBQ0	0.0	A0A0H3YBQ0_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.N02799.1.p	7e-59	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5250	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-38	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]