PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009864-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | YABBY | ||||||||
Protein Properties | Length: 126aa MW: 14108.9 Da PI: 10.6766 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 140.9 | 1.4e-43 | 16 | 100 | 84 | 170 |
YABBY 84 snvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ s+s+++ s + d e p++ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl SMil_00009864-RA_Salv 16 AATTR-DNGSSSNRNRYASLQVDTEQPKMAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 100 33444.44445555556699999999**999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-40 | 18 | 100 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.15E-8 | 41 | 94 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-5 | 48 | 94 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MQLQKQQSLA AAGIDAATTR DNGSSSNRNR YASLQVDTEQ PKMAPIRPPE KRQRVPSAYN 60 RFIKEEIQRI KASNPEISHR EAFSTAAKNW AHFPHIHFGL KMEGNKQAKL DHPVAGEATT 120 QKSLGF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT372783 | 1e-114 | KT372783.1 Mentha spicata YABBY family protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088989.1 | 3e-62 | putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_011088990.1 | 3e-62 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 2e-49 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A0X9RCW2 | 4e-71 | A0A0X9RCW2_MENSP; YABBY family protein 2 | ||||
STRING | Migut.D02379.1.p | 9e-56 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 9e-52 | YABBY family protein |
Publications ? help Back to Top | |||
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