PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009393-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 290aa    MW: 31843.7 Da    PI: 8.1953
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009393-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.51.9e-141761347
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                           ie k    v+fskRr g+ KK +ELS+LC+++v  iifs++g  +
  SMil_00009393-RA_Salv 17 IEKKDDLLVSFSKRRVGVYKKVSELSTLCGVDVGAIIFSPSGIPH 61
                           66666778********************************99655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.15E-18774IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-20766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.549767IPR002100Transcription factor, MADS-box
CDDcd001201.57E-24866No hitNo description
PRINTSPR004042.9E-11929IPR002100Transcription factor, MADS-box
PfamPF003193.4E-181763IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSERKTRGRQ RIPIRLIEKK DDLLVSFSKR RVGVYKKVSE LSTLCGVDVG AIIFSPSGIP  60
HSFFTPDFDS VVYGRRNAAQ KRDDNLNGSP RTRIRELNKR LDEVVEKQER EEKREKQLGG  120
GAEMGWWEVP VESLNGEQVK EQIEWFQALR AQIKSRVQEL KNGTASSPPE DGDGALGHVS  180
GECSFAPPAS LDAYAGNQNP FPLPPPPPPP HFDGGGGSSV AADRYHFAAC VGGGSGQYCY  240
PAASLNMFEQ YLQPPSPLRG GISQCLGDRY GYLPQAQGYG EPGPSHRTQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082025.19e-57proline-rich extensin-like protein EPR1 isoform X1
TrEMBLA0A4D9B4V77e-75A0A4D9B4V7_SALSN; Uncharacterized protein
STRINGMigut.A00408.1.p3e-50(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-24AGAMOUS-like 61