PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005108-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 365aa    MW: 40233.9 Da    PI: 7.535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005108-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12301346655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR +i +++ +L+el+P+      k  + +++L +Av+YIk+Lq
  SMil_00005108-RA_Salv 301 SIAERVRRTKISERMRKLQELVPNM----EKQTNTSDMLDLAVDYIKDLQ 346
                            689*********************6....4679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.831295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15298355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-12299350No hitNo description
Gene3DG3DSA:4.10.280.107.5E-15300357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
LMNSHEQQFQ QNTQMGSGLT RYRSAPSSYL TSLLSAPSSD GGFGEEDFAE LFNPRASSPE  60
TQVIFSRFMN SSGQESRPSI APLPRKSENQ EYAPPQKLQR QHSHDLYSEA AAVADTSYSK  120
VFAPLNSNCA APVQVKMERT SGLIRHSSSP AGLFANINIE NVKMFQQSTE FKTMRGVGSY  180
GGGNSANSEA TFSSSANRFV AQMDYPSSSA MNMMNPISEG IGENAAVDDD DVDFITSLPW  240
DDSPLLSDPY LNDQKNEAGN RPKTLLSHHL SLPKAAMEKL LQDSVPCKIR AKRGCATHPR  300
SIAERVRRTK ISERMRKLQE LVPNMEKQTN TSDMLDLAVD YIKDLQRQVK TLSGNQAKCS  360
CSAKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574850.0KP257485.1 Salvia miltiorrhiza clone 52 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080320.11e-126transcription factor bHLH130
TrEMBLA0A0H3YC400.0A0A0H3YC40_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D00568.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.14e-67bHLH family protein