PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004782-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 553aa    MW: 62173.4 Da    PI: 8.9315
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004782-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.45.4e-3062146187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++k+g+ ++  ++ + +++fdqlea
  SMil_00004782-RA_Salv  62 RWPRQETLALLKIRSDMDVTFRDASLKGPLWEEVSRKLAELGFQRSAKKCKEKFENVFKYHKRTKDGRASK--QDAKAYRFFDQLEA 146
                            8********************************************************************95..67778*******85 PP

2trihelix106.91.4e-33408493187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev aLi++r+++e +++++  k+plWee+sk+m+  g++rs+k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a
  SMil_00004782-RA_Salv 408 RWPKAEVEALIKLRKDLEVKYQENGPKGPLWEEISKAMSNIGYNRSSKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 493
                            8*********************************************************************8.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.009259121IPR001005SANT/Myb domain
CDDcd122031.30E-2561126No hitNo description
PfamPF138376.0E-1961147No hitNo description
PROSITE profilePS500906.89961119IPR017877Myb-like domain
PROSITE profilePS500907.956401465IPR017877Myb-like domain
SMARTSM007177.4E-6405467IPR001005SANT/Myb domain
CDDcd122032.61E-27407472No hitNo description
PfamPF138378.1E-24407494No hitNo description
Gene3DG3DSA:1.10.10.606.1E-5407464IPR009057Homeodomain-like
SuperFamilySSF466891.26E-5407502IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
LENEDSFYMM LGVSGLIATS AADNHESGGA SGGSSEVGAS SSALAGGVDE SERVGQGGGG  60
NRWPRQETLA LLKIRSDMDV TFRDASLKGP LWEEVSRKLA ELGFQRSAKK CKEKFENVFK  120
YHKRTKDGRA SKQDAKAYRF FDQLEALENT SPNNHHFSPP PPPRLQPPPS VAMVSTAATP  180
MPSHVTVPSA SPTPLSVVPP KNIATVHPIT SSPFQQSHQH QHQPQPQPQQ QLPPYPHPLS  240
NSTSSSTSSD EDIQRRRGRK RKWKEYFEKL MTDVVQKQEE LQKKFLEALE RRERDRITRE  300
EAWRVQETAR MNREHDILVQ ERSLAAAKDS AVISFLQKVT GQTNLQIPTT NNIIAPPQPS  360
MPPPPQQTSL PPPPELQSTP TPTKTLDITP HRDNGGGGDD HISPSSSRWP KAEVEALIKL  420
RKDLEVKYQE NGPKGPLWEE ISKAMSNIGY NRSSKRCKEK WENINKYFKK VKESNKKRPQ  480
DSKTCPYFHQ LDAIYKERAK NHVPSFNLGP IMARPEQQWP QQQQQSMHQD NESENHEGGG  540
EEEDDNTMTT TTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255261RRGRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101538.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A4D8YX030.0A0A4D8YX03_SALSN; Uncharacterized protein
STRINGXP_009618661.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-126Trihelix family protein