PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004782-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Trihelix | ||||||||
Protein Properties | Length: 553aa MW: 62173.4 Da PI: 8.9315 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.4 | 5.4e-30 | 62 | 146 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++k+g+ ++ ++ + +++fdqlea SMil_00004782-RA_Salv 62 RWPRQETLALLKIRSDMDVTFRDASLKGPLWEEVSRKLAELGFQRSAKKCKEKFENVFKYHKRTKDGRASK--QDAKAYRFFDQLEA 146 8********************************************************************95..67778*******85 PP | |||||||
2 | trihelix | 106.9 | 1.4e-33 | 408 | 493 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+++e +++++ k+plWee+sk+m+ g++rs+k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a SMil_00004782-RA_Salv 408 RWPKAEVEALIKLRKDLEVKYQENGPKGPLWEEISKAMSNIGYNRSSKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 493 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0092 | 59 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.30E-25 | 61 | 126 | No hit | No description |
Pfam | PF13837 | 6.0E-19 | 61 | 147 | No hit | No description |
PROSITE profile | PS50090 | 6.899 | 61 | 119 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.956 | 401 | 465 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.4E-6 | 405 | 467 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.61E-27 | 407 | 472 | No hit | No description |
Pfam | PF13837 | 8.1E-24 | 407 | 494 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-5 | 407 | 464 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.26E-5 | 407 | 502 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
LENEDSFYMM LGVSGLIATS AADNHESGGA SGGSSEVGAS SSALAGGVDE SERVGQGGGG 60 NRWPRQETLA LLKIRSDMDV TFRDASLKGP LWEEVSRKLA ELGFQRSAKK CKEKFENVFK 120 YHKRTKDGRA SKQDAKAYRF FDQLEALENT SPNNHHFSPP PPPRLQPPPS VAMVSTAATP 180 MPSHVTVPSA SPTPLSVVPP KNIATVHPIT SSPFQQSHQH QHQPQPQPQQ QLPPYPHPLS 240 NSTSSSTSSD EDIQRRRGRK RKWKEYFEKL MTDVVQKQEE LQKKFLEALE RRERDRITRE 300 EAWRVQETAR MNREHDILVQ ERSLAAAKDS AVISFLQKVT GQTNLQIPTT NNIIAPPQPS 360 MPPPPQQTSL PPPPELQSTP TPTKTLDITP HRDNGGGGDD HISPSSSRWP KAEVEALIKL 420 RKDLEVKYQE NGPKGPLWEE ISKAMSNIGY NRSSKRCKEK WENINKYFKK VKESNKKRPQ 480 DSKTCPYFHQ LDAIYKERAK NHVPSFNLGP IMARPEQQWP QQQQQSMHQD NESENHEGGG 540 EEEDDNTMTT TTM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 255 | 261 | RRGRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101538.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-143 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A4D8YX03 | 0.0 | A0A4D8YX03_SALSN; Uncharacterized protein | ||||
STRING | XP_009618661.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-126 | Trihelix family protein |