PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004014-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 390aa    MW: 41882.8 Da    PI: 6.6084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004014-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11234282355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR+ri +++  L+el+P +    +k   Ka++L + ++Y++sLq
  SMil_00004014-RA_Salv 234 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAMMLDEIINYVQSLQ 282
                            58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-17229299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-11229286No hitNo description
PROSITE profilePS5088815.447231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17231301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-8234282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
LIMGSEGSGG RVFQHRGGGG GRALNSGMGG TNSVSDKVSG VTMCSESMFY GSNWDPIMSL  60
SQSGNFGNSN IVSQSEFANP LMLENQTMGS SSLPQFPSDS GLVDLVPRIP SFGSGSFSEM  120
VTSFGHNSES PSLKKGVSQD HCLNSDNGML GASPYGKRKR EVQQGASPKS AEEEQHKDPS  180
GDTSREDDDK KQKFEKGIAR GKQAAKQAKD DQSGAEPSKD DYIHVRAKRG QATNSHSLAE  240
RVRRERISER MRLLQELVPG CNKITGKAMM LDEIINYVQS LQQQVEFLSM KLATVNPELN  300
MDIDRILSKD ILHLRGGNTT PLGVTPGLSS SLPFPPYPQG VFNSAPGSGA AFHSLPQHIW  360
NTELQGLLQM GFDPDPSGGM GPNGSSKMEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574660.0KP257466.1 Salvia miltiorrhiza clone 33 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069808.11e-175transcription factor bHLH74
TrEMBLA0A0H3Y7H60.0A0A0H3Y7H6_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_004290997.11e-126(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-68bHLH family protein