PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001946-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 535aa MW: 57380.1 Da PI: 6.9715

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001946-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.2e-15	384	434	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ ++ SMil_00001946-RA_Salv 384 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEQLQKKQAEIMEM 434 79****************************************999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.9E-12	380	438	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.473	382	433	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.75E-11	384	433	No hit	No description
CDD	cd14707	3.85E-27	384	438	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-15	384	433	No hit	No description
Pfam	PF00170	5.5E-13	384	435	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	387	402	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MGSNLNFKNF GNEPTAGGGG RPPNNSPLTR QSSVYSLTFD EFQNTIGGSG KDFGSMNMDE 60 LLKSIWSAED NQNFAPASGG GGGGGGGGIG GGSGGQEGGG LQRQGSLILP RTLSQKTVDE 120 VWRDMSKEAV AAKDGAVSVA SFGMPQRQQT LGEITLEEFL VRAGVVREEA QLAAAANNAG 180 IFGDLWHPVN SSSGLGFGYQ QQHQQQQQQQ QASRNLGLIG AGVTETSNQM AAQSAANLPL 240 NVNGVRSAPQ QMENHQLQQQ QQQQQQRQHQ HQHQHQQILP KQSTLAYGSA MGIPSNGQLS 300 SPRIRGGMVG ISDPGMNNSP VHNSALQGGG LGMVGLVSNG SPAVSSDGLS KSNGDTSSVS 360 PVPYVFNGGL RGRKSAALEK VVERRQRRMI KNRESAARSR ARKQAYTMEL EAEVAKLKEE 420 NEQLQKKQAE IMEMQKNQIL FSHFLKVEFP LDEVFSSPPV MGLGQSHEIM NPLWPSKTSI 480 PHLSISLSHA LIIFCLMLAG SGDDETAEWR QETVLEKDAD GAMVSAIWNE IRLCK

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MGSNLNFKNF GNEPTAGGGG RPPNNSPLTR QSSVYSLTFD EFQNTIGGSG KDFGSMNMDE  60
LLKSIWSAED NQNFAPASGG GGGGGGGGIG GGSGGQEGGG LQRQGSLILP RTLSQKTVDE  120
VWRDMSKEAV AAKDGAVSVA SFGMPQRQQT LGEITLEEFL VRAGVVREEA QLAAAANNAG  180
IFGDLWHPVN SSSGLGFGYQ QQHQQQQQQQ QASRNLGLIG AGVTETSNQM AAQSAANLPL  240
NVNGVRSAPQ QMENHQLQQQ QQQQQQRQHQ HQHQHQQILP KQSTLAYGSA MGIPSNGQLS  300
SPRIRGGMVG ISDPGMNNSP VHNSALQGGG LGMVGLVSNG SPAVSSDGLS KSNGDTSSVS  360
PVPYVFNGGL RGRKSAALEK VVERRQRRMI KNRESAARSR ARKQAYTMEL EAEVAKLKEE  420
NEQLQKKQAE IMEMQKNQIL FSHFLKVEFP LDEVFSSPPV MGLGQSHEIM NPLWPSKTSI  480
PHLSISLSHA LIIFCLMLAG SGDDETAEWR QETVLEKDAD GAMVSAIWNE IRLCK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	92	SGGGGGGGGGGIGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083869.1	0.0	bZIP transcription factor 23
Refseq	XP_011083870.1	0.0	bZIP transcription factor 23
Swissprot	Q9M7Q4	1e-114	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A4D9B9L8	0.0	A0A4D9B9L8_SALSN; ABA responsive element binding factor
STRING	XP_009795221.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-81	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]