PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001895-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 350aa MW: 38503.1 Da PI: 9.069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001895-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	235	282	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq SMil_00001895-RA_Salv 235 SHSLAERARREKISERMRILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 282 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-17	229	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.21E-9	229	286	No hit	No description
PROSITE profile	PS50888	15.726	231	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-17	231	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-7	235	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-10	237	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MISVSGRRRS LFLSLSTLEK HCVCVCAGSS HCTPLRTVLT QQPALFQGKK IHSICPLPSY 60 TFTHPPVSIH SCSSARPDRR NSLPPPSMDP QGPAMMNEGG VYNFAEIWPA FQMNATATSY 120 GLGLDPMVMD QRSNHSPPNH NSRKRREDDD CVKGGASTSN SNGNSNNTTN NNNNNVMSEG 180 DNKRLKAVGS NHARETKTEG EVNSTKASEA LAKPADPSKQ DYIHVRARRG QATDSHSLAE 240 RARREKISER MRILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNARVS 300 IDGYPSKDFS QQTFDSSGMA YGSQSTREYG RGSSPEWLHM QIGGGFERSS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MISVSGRRRS LFLSLSTLEK HCVCVCAGSS HCTPLRTVLT QQPALFQGKK IHSICPLPSY  60
TFTHPPVSIH SCSSARPDRR NSLPPPSMDP QGPAMMNEGG VYNFAEIWPA FQMNATATSY  120
GLGLDPMVMD QRSNHSPPNH NSRKRREDDD CVKGGASTSN SNGNSNNTTN NNNNNVMSEG  180
DNKRLKAVGS NHARETKTEG EVNSTKASEA LAKPADPSKQ DYIHVRARRG QATDSHSLAE  240
RARREKISER MRILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNARVS  300
IDGYPSKDFS QQTFDSSGMA YGSQSTREYG RGSSPEWLHM QIGGGFERSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257519	0.0	KP257519.1 Salvia miltiorrhiza clone 86 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071046.1	1e-142	transcription factor bHLH79-like
Swissprot	Q69WS3	2e-70	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A0H3YBU5	0.0	A0A0H3YBU5_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.L01368.1.p	1e-142	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	4e-81	BIG PETAL P