PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000512-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 225aa    MW: 25460.2 Da    PI: 10.1966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000512-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-067998120
                           EEETTTTEEESSHHHHHHHH CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                           ++C+ C+k+F+r  nL+ H+
  SMil_00000512-RA_Salv 79 FSCHVCKKTFNRYNNLQMHM 98
                           89*****************9 PP
2zf-C2H211.20.0011163185123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C +Cgk+   k + ++H +++
  SMil_00000512-RA_Salv 163 FSCRKCGKCLAVKGDWRTHEKNC 185
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-574101No hitNo description
PROSITE profilePS5015710.11879106IPR007087Zinc finger, C2H2
SMARTSM003550.379101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-47998IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM0035573126158IPR015880Zinc finger, C2H2-like
SMARTSM00355130163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
LFLKKKNQEM EPFDFFPRKS GEMALQSSQS CDEDDDAAAI SLQIGLPNSG SGGGKKEANS  60
AAKYWIPSAA QIVVGFTHFS CHVCKKTFNR YNNLQMHMWG HGSQFRRGAE SLKGRQPRGI  120
MGIPCYCCEE GCKNNIDEPR AKPLKDFRTL QTHYKRKHGS KRFSCRKCGK CLAVKGDWRT  180
HEKNCGKRWL CVCGSHFKHK RSLKDHVAAF ASPHRPSSPP TFLKH
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074196.11e-113protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-94TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A2G9HH991e-113A0A2G9HH99_9LAMI; Uncharacterized protein
STRINGMigut.N02889.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.16e-97C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]