PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00000467-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 20755.7 Da PI: 8.4967 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H SMil_00000467-RA_Salv 80 FSCLYCNRKFCTSQALGGHQNAH 102 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.01E-6 | 77 | 107 | No hit | No description |
PROSITE profile | PS50157 | 11.032 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MADPSTYDFF KLNTHPSNKL NPPSNSCSNS RLFSCLYCXL SHLRTTSMAD PSTYDFFKLN 60 THPSNKLNPP SNSCSNSRLF SCLYCNRKFC TSQALGGHQN AHKRERAATR RNLAAGDAVS 120 RPHSHPPAAA ASFELNSPPP PSYGHWLQQS LDDGSSSAPL AVFGGGRSIS ERFSVDDSGD 180 NVNLDLTLRL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844085.1 | 9e-53 | PREDICTED: zinc finger protein 4 | ||||
TrEMBL | A0A4D9BDZ8 | 5e-68 | A0A4D9BDZ8_SALSN; Uncharacterized protein | ||||
STRING | Migut.F00027.1.p | 4e-52 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9238 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14010.1 | 3e-16 | C2H2 family protein |