PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_60367.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 126aa    MW: 13993.2 Da    PI: 10.2202
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_60367.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind74.15.5e-2326126126228
                GAGA_bind 126 lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPv 210
                              ++  e + +++++  ++ ++e+++  ++++++k++++k ++kk++  ++k  +k+ s+ ++ k+ekk+ d+ v++  s+D s++P+
  Rsa1.0_60367.1_g00001.1  26 AEPAEVVVVPQVHLFPPPTRESRHDIEQKSPSKALKPKPQSKKRS--APKTPKKTLSV-PEIKREKKNPDInVVDISSFDVSGVPP 108
                              445666777778888888888888888999999999999988884..44344444443.689*********889999********* PP

                GAGA_bind 211 PvCsCtGalrqCYkWGnG 228
                              PvCsCtG++++CYkWG+G
  Rsa1.0_60367.1_g00001.1 109 PVCSCTGVPKVCYKWGMG 126
                              ****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.8E-51126IPR010409GAGA-binding transcriptional activator
PfamPF062174.2E-1724126IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
SNPHWFHSYF PVPRTTGFDL SQVPQAEPAE VVVVPQVHLF PPPTRESRHD IEQKSPSKAL  60
KPKPQSKKRS APKTPKKTLS VPEIKREKKN PDINVVDISS FDVSGVPPPV CSCTGVPKVC  120
YKWGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_60367.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629841.14e-75PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822864e-55BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A3P6A6329e-74A0A3P6A632_BRACM; Uncharacterized protein
STRINGBo3g028310.12e-74(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-48basic pentacysteine 7