PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_53212.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 142aa    MW: 15276.5 Da    PI: 5.1902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_53212.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-10225427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                             + C +f ++G+CkyG++Ck+ H++
  Rsa1.0_53212.1_g00001.1  2 PACGNFKAYGFCKYGSNCKYDHPM 25
                             78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.507126IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-8225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4423IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
QPACGNFKAY GFCKYGSNCK YDHPMPLNPY NMTTPSLPTV STHPRRTPPP SRSDSTAISN  60
GDKPAAENHS SEIEKQDKSE VQGSSQLGHS DSTAIYNGNK PAAESDSSEI GKQEDISDKS  120
EVQDSSQISR SELTVISNGD KP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_53212.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472932.12e-80PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487723e-28C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A0D3B4M32e-50A0A0D3B4M3_BRAOL; Uncharacterized protein
STRINGBo3g027010.14e-51(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-22zinc finger nuclease 2