PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_33205.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 16883.8 Da PI: 7.9291 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00072 | 8 | 30 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ksF + L H +H Rsa1.0_33205.1_g00001.1 8 HVCVTCNKSFASYQALGGHRASH 30 79**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 77 | 96 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C +sFs+ L H Rsa1.0_33205.1_g00001.1 77 HVCTICQRSFSTGQALGGHK 96 79*********988887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.31E-8 | 7 | 30 | No hit | No description |
PROSITE profile | PS50157 | 9.411 | 8 | 35 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-10 | 8 | 32 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.55 | 8 | 30 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 10 | 30 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.31E-8 | 72 | 99 | No hit | No description |
Pfam | PF13912 | 2.8E-12 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.286 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
GGGAREKHVC VTCNKSFASY QALGGHRASH NKVKISENHQ ARANGEALLL GTEAIVTGLA 60 SAQGPNTSLS ISNKGDHVCT ICQRSFSTGQ ALGGHKRCHW PGPASNEAAT APGPVSSEAA 120 TAAPTAPEAG SSSQVVETVQ EVKRLKRKFL EFDLNELPPN EE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_33205.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241194 | 1e-101 | AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455488.1 | 1e-102 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A0D3EBN6 | 1e-95 | A0A0D3EBN6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6TH39 | 2e-99 | A0A3N6TH39_BRACR; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A3P6E2D7 | 1e-95 | A0A3P6E2D7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g123640.1 | 2e-96 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 6e-59 | C2H2 family protein |