PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_18994.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 334aa    MW: 36555.7 Da    PI: 4.4494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_18994.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-17109159155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p     +   r +lg+f + +eAa a+++a+++l+g
  Rsa1.0_18994.1_g00001.1 109 CNYRGVRQRT-WGKWVAEIREP-----CrgSRLWLGTFPSSYEAALAYDEAARALYG 159
                              56*****999.**********8.....337************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.55E-31109168No hitNo description
PfamPF008472.3E-12109159IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-19110168IPR016177DNA-binding domain
SMARTSM003801.4E-34110173IPR001471AP2/ERF domain
PROSITE profilePS5103221.43110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-29110168IPR001471AP2/ERF domain
PRINTSPR003677.5E-9111122IPR001471AP2/ERF domain
PRINTSPR003677.5E-9133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
VGKEAGVFRL GLFVNVNLVL KFRTFGIVSL YRVETLANGS ELFLGRKRKP RDGGTSVAAT  60
LQKWREYNEQ TEAASCNDDG GLKPIRKAPP KGSRKGCMKG KGGPENLICN YRGVRQRTWG  120
KWVAEIREPC RGSRLWLGTF PSSYEAALAY DEAARALYGK SARLNLPDIS TSGGSVTTLS  180
NESEVCAVEE TNVRSGLVQV KEEDVSDEYV FLNSSQCIKE DVEEEVSVLD SADAFGNGNE  240
HEPWDFGVGE MFDVDEVLGF LGETNVSGQE TMQGQDDRSS NFTCQMQFPD ANLLGSLDHK  300
ETATPGVDYG CPIVQPIEMD NSCVDLDNSS TILT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-17110167260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_18994.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481559.10.0PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ8LFR21e-127DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A3P6CZ771e-138A0A3P6CZ77_BRAOL; Uncharacterized protein
STRINGBo4g190040.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-113ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]