PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17314.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 355aa    MW: 39820.2 Da    PI: 7.5967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17314.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.1e-1422981195
                             HHTT-EE--HHH.HTT....---..--SEEEE.EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3 11 lksgrlvlpkkfaeeh....ggkkeesktltl.edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                             + s+ l++p +f+ +h    +  +   k  +l +d s r+W+vk+  ++ +    lt+GW++F+ a++L+ gD++vF++++    elv
  Rsa1.0_17314.1_g00001.1 22 FHSH-LTIPIPFFLKHlqgrN--QDHVKIAKLtTDASDRTWTVKI--DGLK----LTDGWEDFAVAHDLRIGDIIVFRHER----ELV 96
                             4555.9***********8542..333333444056999*******..6666....***********************655....445 PP

                             EE CS
                       B3 94 vk 95
                             ++
  Rsa1.0_17314.1_g00001.1 97 FH 98
                             54 PP
2B359.75e-19137229599
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               +++++lk +rl+lp +fa+++g++k ++ +++l +e+grsW++kl+++k + +++++ GW++F+ +n++  g   ++kl++ +++
  Rsa1.0_17314.1_g00001.1 137 KVSASNLKFDRLYLPMSFARANGLDKMSGEEIILLNEEGRSWSLKLKHDKADMHTFIRPGWRRFCAENKMSHGHY-TLKLVQ-NSG 220
                              4568889999***************************************************************96.999988.677 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                               +v++++ +
  Rsa1.0_17314.1_g00001.1 221 PPVIRLCGR 229
                              799999875 PP
3B357.52.5e-18247336697
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              ++s++lk++ l+l  +f+ ++g++  +s +++l++e+g +W++ l+   + + ++ + GW+ F++ ng+k+gD+++Fkl+g ++ +
  Rsa1.0_17314.1_g00001.1 247 VTSNSLKTDKLYLGETFVIANGLDRGCS-EIVLKNEWGGRWSLALRCYESASPTYVGPGWRTFCQVNGIKAGDSFMFKLVG-TGDK 330
                              68999*******************8887.****************87777777999***********************99.5555 PP

                              .EEEEE CS
                       B3  92 lvvkvf 97 
                              +v+ ++
  Rsa1.0_17314.1_g00001.1 331 PVLLLC 336
                              777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-188117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.02511105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-1811112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-151299No hitNo description
SMARTSM010193.1E-1914105IPR003340B3 DNA binding domain
PfamPF023621.8E-92399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-18125219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-15129229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.661133230IPR003340B3 DNA binding domain
CDDcd100171.47E-14133227No hitNo description
SMARTSM010192.2E-23134230IPR003340B3 DNA binding domain
PfamPF023625.3E-18137229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-15239338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-16241340IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.62242338IPR003340B3 DNA binding domain
SMARTSM010192.8E-18243339IPR003340B3 DNA binding domain
PfamPF023628.1E-17247336IPR003340B3 DNA binding domain
CDDcd100174.25E-14249336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEDQSLHSPV NPHFFQPLLP GFHSHLTIPI PFFLKHLQGR NQDHVKIAKL TTDASDRTWT  60
VKIDGLKLTD GWEDFAVAHD LRIGDIIVFR HERELVFHIT AMGPSFCEIQ YTSSSSSHNN  120
INESSSSSSD HSRFVAKVSA SNLKFDRLYL PMSFARANGL DKMSGEEIIL LNEEGRSWSL  180
KLKHDKADMH TFIRPGWRRF CAENKMSHGH YTLKLVQNSG PPVIRLCGRV HNSLEPSLHH  240
SCFMGCVTSN SLKTDKLYLG ETFVIANGLD RGCSEIVLKN EWGGRWSLAL RCYESASPTY  300
VGPGWRTFCQ VNGIKAGDSF MFKLVGTGDK PVLLLCTSKT PLECQEESSC SDTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_17314.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085638e-78AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442036.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-137REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3D6U40.0A0A0D3D6U4_BRAOL; Uncharacterized protein
STRINGBo7g054160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-131B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]