PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_09258.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24949.7 Da PI: 9.7 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 148 | 194 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L l+P + K +Ka++L A+++Ik+Lq Rsa1.0_09258.1_g00001.1 148 QEHILAERKRREKLTQRFVALSALIPGL------KKDKASVLGDAIKHIKYLQ 194 56999***********************......99****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-15 | 143 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.617 | 145 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 148 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-15 | 149 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-11 | 150 | 197 | No hit | No description |
SMART | SM00353 | 5.7E-13 | 151 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MATKMNVLST KWTSELDIEE YNIIHQYHMN SLIGDFPQSL SSLNDTTTCY NFGASCNDDL 60 VEDQKPSKIL KTTHESPNLP LYPFLNSTSP LPQPSSRILS FEKMGLKVMN HKSPNLIFIP 120 SEEVGSPDLI RRGTKRAQPL TRSPSNAQEH ILAERKRREK LTQRFVALSA LIPGLKKDKA 180 SVLGDAIKHI KYLQESVNEY EKQKKGRTLE SVVLVTKSLL V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 158 | ERKRRE |
2 | 154 | 159 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_09258.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437993.1 | 1e-160 | PREDICTED: transcription factor bHLH18 | ||||
Swissprot | Q1PF17 | 1e-85 | BH018_ARATH; Transcription factor bHLH18 | ||||
TrEMBL | A0A3P6GR78 | 1e-139 | A0A3P6GR78_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g100910.1 | 1e-139 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.1 | 5e-88 | bHLH family protein |
Publications ? help Back to Top | |||
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