PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_08979.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 329aa MW: 37382.8 Da PI: 4.4654

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_08979.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.6	4.5e-13	66	143	16	98
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vlp ++ +++ ++ ++t +l+ ++g+ W+vk + ++++ + +++GW++F +n ++Df++F++dg+++f +v++fr Rsa1.0_08979.1_g00001.1 66 KVLPSDYRKDYP--TPLPQTAVLRKPEGNFWTVKW--KISQDEtISFEDGWSKFITDNAPLDRDFLLFSYDGSRTF--LVSIFR 143 477777776665..66899**************..555444599********************997666..*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	4.1E-9	42	145	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.55E-15	66	143	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.3E-11	66	143	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.589	67	145	IPR003340	B3 DNA binding domain
CDD	cd10017	1.73E-9	67	143	No hit	No description
Gene3D	G3DSA:2.40.330.10	9.5E-15	67	143	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
GVTDDFSFED FEKAKASPSS KLRHKQEALV VTKMVFTPYP DLLIIYNSLD VSLSQRLGLA 60 LFLTSKVLPS DYRKDYPTPL PQTAVLRKPE GNFWTVKWKI SQDETISFED GWSKFITDNA 120 PLDRDFLLFS YDGSRTFLVS IFRDGLPVKP KDPVNIQEIS DEDDDETAGD DDDDGDDQNM 180 IISLSLGSSD EDDVDTTGGE VNNAHGRSRR VTSSQRKRAE AIGDPQMYLD DPSNPFFIAL 240 STCGRTVLVF PKQVIKDYDL KFDGRIKFID GFGELEAKFG DRKDRLVVHK WKELYERNDA 300 TPEDVIICEI LREGDVVRSI KTHFLRNDV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_08979.1_g00001.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126820.1	1e-144	PREDICTED: B3 domain-containing protein At5g57720-like
Swissprot	Q9FHH1	1e-103	Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBL	A0A3P6A2J9	1e-143	A0A3P6A2J9_BRACM; Uncharacterized protein
TrEMBL	M4DV74	1e-143	M4DV74_BRARP; Uncharacterized protein
STRING	Bra020417.1-P	1e-143	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13797	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	6e-97	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]