PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_08979.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 329aa MW: 37382.8 Da PI: 4.4654 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.6 | 4.5e-13 | 66 | 143 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vlp ++ +++ ++ ++t +l+ ++g+ W+vk + ++++ + +++GW++F +n ++Df++F++dg+++f +v++fr Rsa1.0_08979.1_g00001.1 66 KVLPSDYRKDYP--TPLPQTAVLRKPEGNFWTVKW--KISQDEtISFEDGWSKFITDNAPLDRDFLLFSYDGSRTF--LVSIFR 143 477777776665..66899****************..555444599************************997666..***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.1E-9 | 42 | 145 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-15 | 66 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.3E-11 | 66 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.589 | 67 | 145 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.73E-9 | 67 | 143 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-15 | 67 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
GVTDDFSFED FEKAKASPSS KLRHKQEALV VTKMVFTPYP DLLIIYNSLD VSLSQRLGLA 60 LFLTSKVLPS DYRKDYPTPL PQTAVLRKPE GNFWTVKWKI SQDETISFED GWSKFITDNA 120 PLDRDFLLFS YDGSRTFLVS IFRDGLPVKP KDPVNIQEIS DEDDDETAGD DDDDGDDQNM 180 IISLSLGSSD EDDVDTTGGE VNNAHGRSRR VTSSQRKRAE AIGDPQMYLD DPSNPFFIAL 240 STCGRTVLVF PKQVIKDYDL KFDGRIKFID GFGELEAKFG DRKDRLVVHK WKELYERNDA 300 TPEDVIICEI LREGDVVRSI KTHFLRNDV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_08979.1_g00001.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126820.1 | 1e-144 | PREDICTED: B3 domain-containing protein At5g57720-like | ||||
Swissprot | Q9FHH1 | 1e-103 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | A0A3P6A2J9 | 1e-143 | A0A3P6A2J9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DV74 | 1e-143 | M4DV74_BRARP; Uncharacterized protein | ||||
STRING | Bra020417.1-P | 1e-143 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 6e-97 | B3 family protein |
Publications ? help Back to Top | |||
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