PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_05805.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 316aa MW: 35366.5 Da PI: 6.1446 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.2 | 5.3e-11 | 191 | 237 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L ++ Rsa1.0_05805.1_g00001.1 191 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRIAF 237 899*********************************98888777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.6E-14 | 187 | 251 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.599 | 189 | 241 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.5E-13 | 191 | 242 | No hit | No description |
SuperFamily | SSF57959 | 1.69E-11 | 191 | 245 | No hit | No description |
Pfam | PF00170 | 8.1E-10 | 191 | 236 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 5.87E-24 | 192 | 242 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 194 | 209 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MTTTTTPHWP EFSSQKLPSI AATAAATAGQ QNPSWMDEFL DFSSTRRGTD RRSISDSIAF 60 LDQPSSGVGS HHFDRFDDEQ FMSMFNDDLH QNHHHNNSVN GNVGHTRSSS NTSTPSDQNS 120 LLSGEDNKEQ PPSDNDHMDT TTANDNNVAG NNYNESDEVQ SHCCKTEPQD GPSSTNQDSG 180 KSSGNRIHDP KRVKRILANR QSAQRSRVRK LQYISELERS VTSLQTEVSV LSPRIAFLDH 240 QRLLLNVDNS AIKQQIAALA QDKIFKDAHQ EALKREIERL QQVYHQQSLK KMVDNISDQS 300 LADIKPSVEK EQLLSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator. {ECO:0000269|PubMed:17719007}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_05805.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477358.1 | 0.0 | PREDICTED: basic leucine zipper 61-like | ||||
Refseq | XP_018477359.1 | 0.0 | PREDICTED: basic leucine zipper 61-like | ||||
Swissprot | Q9M2K4 | 1e-169 | BZP61_ARATH; Basic leucine zipper 61 | ||||
TrEMBL | M4CT38 | 1e-174 | M4CT38_BRARP; Uncharacterized protein | ||||
STRING | XP_010427719.1 | 1e-176 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1753 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 1e-159 | bZIP family protein |
Publications ? help Back to Top | |||
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