PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04805.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 542aa    MW: 61158.3 Da    PI: 8.8544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04805.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-12431211297
                              HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               ++ l++p  f+ +h  g ++   kt +l++  s ++W v++  ++      lt+GW++F+  ++L+ gD+++F+++g++ f  +v
  Rsa1.0_04805.1_g00002.1  43 HTH-LSIPVAFFLKHvqG-INDHIKTAKLRTdASAKTWLVNI--SG----LKLTDGWEDFAVTHELRIGDIIIFRHEGEMVF--HV 118
                              444.9***********64.4455568888875888*******..44....55***********************9998888..88 PP

                              EEE CS
                       B3  95 kvf 97 
                              ++f
  Rsa1.0_04805.1_g00002.1 119 TAF 121
                              776 PP
2B366.15.2e-21180273599
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               +++++l+s+rl++p  fa+++g+++ ++k+++l +e+g sW+++++y+  + +++ + GW++F+ +ng+k g   +Fkl++ +++
  Rsa1.0_04805.1_g00002.1 180 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKEIVLLNEEGGSWNLNMTYKEAGPQTYVRPGWRRFCAENGMKKGHHYTFKLVR-KSA 264
                              57889999****************************************999999999**********************998.888 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                               +v+++ r+
  Rsa1.0_04805.1_g00002.1 265 PPVLRLSRA 273
                              888888775 PP
3B358.71e-18294384698
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              ++s++l+ + l+l ++f++++g++  +s ++t+++e+g sW + l+   + ++++l+ GWk F++ ng+k+gD+++Fkl++ ++++
  Rsa1.0_04805.1_g00002.1 294 VSSNSLRINKLYLQREFVTSNGLDRGCS-EITVKNEWGGSWILPLRRYESHNHTYLGPGWKTFCQVNGMKAGDSFMFKLVE-TGAK 377
                              568888999***************8887.****************87778888*************************998.7888 PP

                              .EEEEE- CS
                       B3  92 lvvkvfr 98 
                              +v+ ++ 
  Rsa1.0_04805.1_g00002.1 378 PVLLLCT 384
                              8888875 PP
4B346.37.5e-15445539397
                              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                ++++++l++  l+lp  f++++g++  ++++++l  ++g ++  v l  +k+ g + ++kGW+eF++a+g+ +g++++++l+++
  Rsa1.0_04805.1_g00002.1 445 RLTLTHNALTTYVLYLPLAFTRANGIN--NPRKIMLLGKDGvKKQVVDLLKNKSTGIMRIGKGWREFCDAHGVTVGESFLLELIWE 528
                              5566788888899***********999..5668********555555665455555599*************************99 PP

                              .SEE..EEEEE CS
                       B3  88 .sefelvvkvf 97 
                               +e+ +v+k++
  Rsa1.0_04805.1_g00002.1 529 dKEAIPVLKFC 539
                              89998988888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1928126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1828131IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.99731124IPR003340B3 DNA binding domain
CDDcd100176.09E-1432121No hitNo description
SMARTSM010191.6E-1934124IPR003340B3 DNA binding domain
PfamPF023621.1E-744118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-20169270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18172273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.706176274IPR003340B3 DNA binding domain
CDDcd100171.12E-16177263No hitNo description
SMARTSM010192.3E-25177274IPR003340B3 DNA binding domain
PfamPF023628.8E-19179273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-15289385IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.395289385IPR003340B3 DNA binding domain
SMARTSM010192.4E-17290386IPR003340B3 DNA binding domain
PfamPF023621.0E-16294384IPR003340B3 DNA binding domain
CDDcd100175.69E-14295383No hitNo description
SuperFamilySSF1019363.14E-16300385IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-14439540IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-15440537IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-13442529No hitNo description
PROSITE profilePS5086311.462443541IPR003340B3 DNA binding domain
PfamPF023627.9E-14443540IPR003340B3 DNA binding domain
SMARTSM010196.7E-21443542IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDMVSWEKVD KVSGKGVTTM AYDHSLHSPN NPHFFRPLLP GFHTHLSIPV AFFLKHVQGI  60
NDHIKTAKLR TDASAKTWLV NISGLKLTDG WEDFAVTHEL RIGDIIIFRH EGEMVFHVTA  120
FGPSFCDIQY TSRSSHNIND DSQDQTNNTG NSSGEKKKRM KKNPITKEES SSDHSQFVAH  180
VSPSSLSSDR LYIPTGFARS NGLDNMSGKE IVLLNEEGGS WNLNMTYKEA GPQTYVRPGW  240
RRFCAENGMK KGHHYTFKLV RKSAPPVLRL SRAEHDPKPP PKSPLHHSYY AGSVSSNSLR  300
INKLYLQREF VTSNGLDRGC SEITVKNEWG GSWILPLRRY ESHNHTYLGP GWKTFCQVNG  360
MKAGDSFMFK LVETGAKPVL LLCTSNRGET PLEFPEDSDD VHSLSSDTSS EDDSREEFQE  420
SEEEKRKSGL RCICSSPYSK QRFVRLTLTH NALTTYVLYL PLAFTRANGI NNPRKIMLLG  480
KDGVKKQVVD LLKNKSTGIM RIGKGWREFC DAHGVTVGES FLLELIWEDK EAIPVLKFCT  540
KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04805.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473959.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-148REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3CDE60.0A0A0D3CDE6_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-141B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]