PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03302.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 192aa MW: 21647 Da PI: 7.1818

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03302.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Rsa1.0_03302.1_g00002.1 48 FPCQYCPRKFYTSQALGGHQNAH 70 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.54E-6	45	75	No hit	No description
PROSITE profile	PS50157	11.053	48	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	50	70	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MAEHQPPSSF HHHFACPPPP KHRSSSNYKK HSFPGSHHHQ PPTFNRLFPC QYCPRKFYTS 60 QALGGHQNAH KRERAAARRN LGVVDVDVSH HPHHDAPPSS VNLYDNDAAA FVCPDFYPNT 120 PHQGSSVVTA TGSTWSVLPP DNHQQTTTMM VGGGYVDPYC PPYPYPYPFG YPYGFIMEQE 180 EHEPQLDLSL HL

Functional Description ? help Back to Top
Source	Description
UniProt	May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269\|PubMed:15240552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03302.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189564	8e-52	AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477026.1	1e-120	PREDICTED: zinc finger protein KNUCKLES-like
Swissprot	Q9FFX4	1e-26	KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBL	A0A3P5ZYQ0	4e-63	A0A3P5ZYQ0_BRAOL; Uncharacterized protein
STRING	Bo3g009500.1	4e-55	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6966	20	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	1e-21	C2H2 family protein

Publications ? help Back to Top
Sun B, et al. Timing mechanism dependent on cell division is invoked by Polycomb eviction in plant stem cells. Science, 2014. 343(6170): p. 1248559 [PMID:24482483] Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]