PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03292.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 290aa    MW: 32877.4 Da    PI: 8.0158
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03292.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.17.3e-2450132371
                  E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                              + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwk
  Rsa1.0_03292.1_g00005.1  50 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplndneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWK 131
                              6799999999...****9999********************************************************.*******9 PP

                  E2F_TDP  71 g 71 
                              g
  Rsa1.0_03292.1_g00005.1 132 G 132
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.5E-986286IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.8E-3645136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.7E-2948132IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.25E-1851133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.5E-2051132IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011388.0E-48139290IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-36139280No hitNo description
CDDcd144581.27E-29139240IPR014889Transcription factor DP, C-terminal
PfamPF087812.7E-32140255IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEMDLFVTPE KQRNHPSSVS LGKTPVRRRL IVDDESEVVS EKKCQSRTSG GGLRQFSVMV  60
CQKLEAKKIT TYKEVADEII SDFATIKQNA EKPLNDNEYN EKNIRRRVYD ALNVFMALDI  120
IARDKKEIRW KGLPITCKKD VEEVKMDRNK IMNSVQKKAA FLKELREKVS SLESLMSRNK  180
EMVVKTEGPA EGFTLPFILL ETNPHAVVEI EISEDMQLVH LDFNSTPFSV HDDAYILKLM  240
QEHKLQQQQQ QNRVSSPSST HQHSSSAHSS SSSCIASGTS GPVSWNSGIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2649134890PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03292.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467493.10.0PREDICTED: transcription factor-like protein DPA isoform X2
SwissprotQ9FNY31e-179DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A078HSW00.0A0A078HSW0_BRANA; BnaA10g27090D protein
STRINGBra009586.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-169Transcription factor DP