PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02666.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 99aa    MW: 11151.1 Da    PI: 9.9936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02666.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.4e-191144134
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                             Cs C+ttkTp+WR gp+g+k+LCnaCG+++ +++
  Rsa1.0_02666.1_g00004.1 11 CSDCKTTKTPMWRGGPSGPKSLCNACGIRFMRQR 44
                             *****************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-14449No hitNo description
SMARTSM004013.0E-14559IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.044538IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-15945IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.9E-161143IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401136IPR000679Zinc finger, GATA-type
CDDcd002021.23E-91140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MEEEKERVRC CSDCKTTKTP MWRGGPSGPK SLCNACGIRF MRQRRSELLG IHSHKAYKKI  60
NTSIVSSYGG VFLKKRRSLK EEEQAALCLL LLSCNSVLA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02666.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610592.12e-55PREDICTED: GATA transcription factor 23-like
RefseqXP_013741364.12e-55GATA transcription factor 23
SwissprotQ8LC593e-38GAT23_ARATH; GATA transcription factor 23
TrEMBLA0A0D3E1653e-52A0A0D3E165_BRAOL; Uncharacterized protein
STRINGBo9g010700.16e-53(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.13e-40GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]