PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02639.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 287aa MW: 32459.5 Da PI: 7.5472

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02639.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8e-06	130	149	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Rsa1.0_02639.1_g00001.1 130 FSCHVCFKTFNRYNNLQMHM 149 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.07E-5	123	152	No hit	No description
PROSITE profile	PS50157	10.055	130	157	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.3E-4	130	149	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	132	152	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.22E-5	194	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEYEICSSSS SENHRDHFQF LDLFPNLTPN PNNNNTLIEP LPLIDRINLN SNLNLKPRPS 60 YVGEGDDEGE DEEDVIVDVS LHIGLPDSGN SSNGKEIVTY DAGKDIENAV SGQAYWIPTL 120 EQIIIGFTHF SCHVCFKTFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPRA MLGIPCYCCV 180 EGCRNHIDHP RSKPLKDFRT LQTHYKRKHG QKSYACRICG KLLAVKGDWR THEKNCGKRW 240 VCVCGSDFKH KRSLKDHVKA FGPGHGSYPT GLFDAHASYS SVSETLF

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02639.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458445.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-162	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A3N6R393	1e-176	A0A3N6R393_BRACR; Uncharacterized protein
STRING	Bo6g044010.1	1e-176	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-145	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]