PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02588.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19834.9 Da    PI: 10.3434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02588.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.1e-231865249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +ie +s rqv fskRr+g++KKA+EL++LC++eva+i+fs+  k y +
  Rsa1.0_02588.1_g00007.1 18 KIEKESHRQVAFSKRRAGLFKKASELCTLCGVEVAIIVFSPAKKPYSF 65
                             69***************************************9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.521969IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-29968IPR002100Transcription factor, MADS-box
CDDcd002651.31E-321086No hitNo description
SuperFamilySSF554558.63E-291095IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-171131IPR002100Transcription factor, MADS-box
PfamPF003194.2E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTSKKKGSTG RQRIRMAKIE KESHRQVAFS KRRAGLFKKA SELCTLCGVE VAIIVFSPAK  60
KPYSFGHPNV YTVLDRYKNS TSFQQQSQPL ENMETRSELS LVLSQVEEEK KKGEAMRKSS  120
VMAKWSVEEM SLLQLQEMRS ALEELRNTMV VPPSSYMNTM STAFYNSRYV LASS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02588.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436048.11e-126PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU47e-58AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y5G32e-99A0A397Y5G3_BRACM; Uncharacterized protein
STRINGBra026764.1-P1e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-53AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]