PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02373.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 137aa    MW: 14952.5 Da    PI: 5.5942
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02373.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.13.1e-1056112154
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrerg...ferspkqCkekw 54 
                              +W+++ +++Li+a  ++  + ++g lk+++W +v++ + e g   ++r+ +qCk+++
  Rsa1.0_02373.1_g00001.1  56 CWSEEATKVLIDAWGDRFAEPGKGTLKQQQWHQVAEIVNESGhckYTRTDVQCKNRI 112
                              8*************************************66653338*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1454113No hitNo description
CDDcd001670.0094157111No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEEGDETQSP VNPSSPAPIL PTVASSSSQS PLALTVHTPS VNKNGRSGGG GGREDCWSEE  60
ATKVLIDAWG DRFAEPGKGT LKQQQWHQVA EIVNESGHCK YTRTDVQCKN RIDCQPRLPL  120
FILQDTGTSH LQDQRIN
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02373.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448887.12e-83PREDICTED: trihelix transcription factor ASIL1-like
SwissprotQ9SYG21e-36ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A3N6RXP96e-46A0A3N6RXP9_BRACR; Uncharacterized protein
STRINGBo3g184450.18e-46(Brassica oleracea)
STRINGBo6g033010.11e-44(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.14e-386B-interacting protein 1-like 1