PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_02232.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29410.3 Da PI: 4.6261 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.6 | 5.9e-10 | 13 | 78 | 30 | 98 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ ++ +l+ ++g+ W+vk + +++++ +++GW +F + ++Df++F++dg+++f +v++fr Rsa1.0_02232.1_g00004.1 13 TPLPQASVLRKPEGNFWTVKWT-ISQDDTISFEDGWTKFITDTAPLDRDFLLFSYDGSRTF--LVSIFR 78 456667899************4.33344599************************997666..***998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.041 | 1 | 80 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-12 | 1 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-11 | 2 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-7 | 9 | 78 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.53E-6 | 159 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MVLPSDNRKY YPTPLPQASV LRKPEGNFWT VKWTISQDDT ISFEDGWTKF ITDTAPLDRD 60 FLLFSYDGSR TFLVSIFRDG LPVKPKDPVN IQEISDEDDD GDQDMEKEED NNLNMINSRS 120 LGSSDKDDAD TTGESIVRKN TKLRKKRAEA IGDPEMYLHD PSNPCFIVTS SSSHMLFISM 180 QVINDYGLKF GGTIKFIDGF GELKAKIGKG KSRVVVYKWN EIYERNDAKP EDVIICEILC 240 EGCVVLSIKR LLCCPFVSY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_02232.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126820.1 | 1e-112 | PREDICTED: B3 domain-containing protein At5g57720-like | ||||
Swissprot | Q9FHH1 | 4e-85 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | A0A3P6A2J9 | 1e-111 | A0A3P6A2J9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DV74 | 1e-111 | M4DV74_BRARP; Uncharacterized protein | ||||
STRING | Bra020417.1-P | 1e-112 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57720.1 | 1e-75 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|