PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01600.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 537aa    MW: 60749.4 Da    PI: 7.9505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01600.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-14251021397
                              TT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  13 sgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              ++ l++p  f+++h  g  +   kt +l++  sgr+W vk+  ++ +    +++GW++F+ a++L+ gD+++F+++g++ f  +v+
  Rsa1.0_01600.1_g00009.1  25 TH-LSIPVVFFSKHlkG-RNDHIKTAKLRTdASGRTWLVKI--NGLR----FADGWEGFAVAHDLRIGDIIIFRHEGEMAF--HVT 100
                              55.9***********73.3344457777766**********..5555....9***********************999999..888 PP

                              EE CS
                       B3  96 vf 97 
                              +f
  Rsa1.0_01600.1_g00009.1 101 AF 102
                              77 PP
2B354.91.6e-171692541095
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              +l+ +rl++p +f +++g+++ ++k+++l de+grsW++++ +y+++  +++ + GW++F+ +ng+ +g   +Fkl++ +++ +v+
  Rsa1.0_01600.1_g00009.1 169 SLRFDRLYVPISFSRSNGMDNMSGKDIVLLDEEGRSWNLNItTYTNTTMQTYVGPGWRRFCAENGMSQGHQYTFKLVR-KSAPPVI 253
                              566689***********9999********************5569999999************************997.6766776 PP

                              E CS
                       B3  95 k 95 
                              +
  Rsa1.0_01600.1_g00009.1 254 R 254
                              5 PP
3B361.91.1e-19275366699
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              ++s+ l+++rl+l ++f++++g++   s +++l++e+g +W++ l+y  ++++++l+ GWk F++ ng+k+gD+ +Fk+++ ++ +
  Rsa1.0_01600.1_g00009.1 275 VSSNDLRKDRLYLKRQFITANGLDRGFS-EIILKNEWGGQWSLGLRYYESPDHTYLGPGWKTFCQVNGIKAGDSNMFKVVE-TGDK 358
                              5789999***************998776.*************************************************887.6667 PP

                              .EEEEE-S CS
                       B3  92 lvvkvfrk 99 
                              +v+ ++++
  Rsa1.0_01600.1_g00009.1 359 PVLLLCSS 366
                              89888875 PP
4B345.41.5e-14439534397
                              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                              k ++++ +l++  l+lp +f++ +g++k++  +++l  ++g + +v    ++++++  + l+kGW+eF++a+g+k+g+++++kl++
  Rsa1.0_01600.1_g00009.1 439 KLTLTPRALRTYKLMLPLSFTRVNGINKPG--KMILLYKDGVKKQVVDLLDQNRNTgiMRLGKGWREFCDAHGVKVGESFLLKLIR 522
                              6677888899999************99776..688888888555555445444444459**************************9 PP

                              S.SEE..EEEEE CS
                       B3  87 r.sefelvvkvf 97 
                              + +e+ +v++++
  Rsa1.0_01600.1_g00009.1 523 EdEEAIPVLQFC 534
                              878888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-229107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-209112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54712105IPR003340B3 DNA binding domain
CDDcd100171.42E-1613102No hitNo description
SMARTSM010193.2E-2115105IPR003340B3 DNA binding domain
PfamPF023625.1E-927100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-16153252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-15154254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704160259IPR003340B3 DNA binding domain
CDDcd100171.29E-10160248No hitNo description
SMARTSM010191.2E-17161259IPR003340B3 DNA binding domain
PfamPF023621.2E-15167254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-16267366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-16269369IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.099270366IPR003340B3 DNA binding domain
SMARTSM010197.5E-22271367IPR003340B3 DNA binding domain
PfamPF023621.0E-17275366IPR003340B3 DNA binding domain
CDDcd100175.64E-14276365No hitNo description
Gene3DG3DSA:2.40.330.105.8E-15429534IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-16433534IPR015300DNA-binding pseudobarrel domain
CDDcd100176.85E-13436526No hitNo description
SMARTSM010193.7E-19437537IPR003340B3 DNA binding domain
PROSITE profilePS5086311.364437536IPR003340B3 DNA binding domain
PfamPF023621.9E-13438535IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MADDQSLRSP DNPHFFQPLL PGFCTHLSIP VVFFSKHLKG RNDHIKTAKL RTDASGRTWL  60
VKINGLRFAD GWEGFAVAHD LRIGDIIIFR HEGEMAFHVT AFGPSCCDIQ YTSRSSHDIC  120
DDSQDQTNNT VTRNSSGEKR KGVEKTPRTT KKKSSSDHSH FMAHVSPWSL RFDRLYVPIS  180
FSRSNGMDNM SGKDIVLLDE EGRSWNLNIT TYTNTTMQTY VGPGWRRFCA ENGMSQGHQY  240
TFKLVRKSAP PVIRLSLGEP APESALHHSY YVGSVSSNDL RKDRLYLKRQ FITANGLDRG  300
FSEIILKNEW GGQWSLGLRY YESPDHTYLG PGWKTFCQVN GIKAGDSNMF KVVETGDKPV  360
LLLCSSNRGK TPSECSKDSD DVDSLSSDTS SGDYSREESQ ESEEESLGDE GSSQEWFEME  420
KEKNIYRASS SYSQDPYVKL TLTPRALRTY KLMLPLSFTR VNGINKPGKM ILLYKDGVKK  480
QVVDLLDQNR NTGIMRLGKG WREFCDAHGV KVGESFLLKL IREDEEAIPV LQFCTKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540KHLKGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01600.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473922.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A0D3CDE80.0A0A0D3CDE8_BRAOL; Uncharacterized protein
TrEMBLA0A397XYM30.0A0A397XYM3_BRACM; Uncharacterized protein (Fragment)
STRINGBo5g044980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-137B3 family protein