PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01329.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 34804.6 Da PI: 5.6272 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.7e-10 | 204 | 252 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Rsa1.0_01329.1_g00002.1 204 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 252 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.4E-17 | 199 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.06E-11 | 199 | 256 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 201 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-17 | 202 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 204 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 207 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGGESNEGEM GLNHGHDPSR VGSTTSMPLY AKADPFFSSA DWDPVVNVGG FSSSHYSSVV 60 MDNPGMSCFT HYQPGSGYPD MPTSLLPFVD CGDGGGGHFL GSDKNGDSVG RLIRAGESHD 120 QVSDDGVLGV SPNRKRRQAE AESQRNKKAV EEYREDPQRG SDQSQTKHKD GQSKETMNKE 180 SSQSEEAPKE NYIHMRARRG QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM 240 LDEIINYVQS LQQQVEFLSM KLATVNPEIN IDIDRIIAKD TALESELQSL YQMGFVSNPS 300 TMSSFSPNNG RLKPEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01329.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486323.1 | 0.0 | PREDICTED: transcription factor bHLH74-like | ||||
Refseq | XP_018492018.1 | 0.0 | PREDICTED: transcription factor bHLH74-like | ||||
Swissprot | Q6NKN9 | 1e-176 | BH074_ARATH; Transcription factor bHLH74 | ||||
TrEMBL | A0A0D3DY79 | 0.0 | A0A0D3DY79_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g110780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5196 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-176 | bHLH family protein |
Publications ? help Back to Top | |||
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