PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01151.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | YABBY | ||||||||
Protein Properties | Length: 142aa MW: 16031.1 Da PI: 10.9052 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 145.2 | 6.9e-45 | 5 | 118 | 63 | 170 |
YABBY 63 ldeslkeelleelkveeenlksnvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrika 142 l++s ++++++l++ +++++s v+++e s+s+ss++ sen d+e+pr+pp + PekrqrvPsaynrfikeeiqrika Rsa1.0_01151.1_g00011.1 5 LHQSSPPPIHQDLQQPKQHITSSVTRKEWGSSSRSSNHYsttlSENVDREAPRMPPirLMAAPEKRQRVPSAYNRFIKEEIQRIKA 90 556777889**********9999999887766666655444449***********9556789************************ PP YABBY 143 snPdishreafsaaaknWahfPkihfgl 170 +nP ishreafs+aaknWahfP+ihfgl Rsa1.0_01151.1_g00011.1 91 GNPAISHREAFSTAAKNWAHFPHIHFGL 118 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.6E-40 | 11 | 118 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-7 | 62 | 111 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 65 | 112 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MGVSLHQSSP PPIHQDLQQP KQHITSSVTR KEWGSSSRSS NHYSTTLSEN VDREAPRMPP 60 IRLMAAPEKR QRVPSAYNRF IKEEIQRIKA GNPAISHREA FSTAAKNWAH FPHIHFGLKL 120 DGNKKGKQLD QTVAGHKSNG YF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01151.1_g00011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353326 | 1e-157 | AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490561.1 | 1e-103 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 8e-79 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A078GBE0 | 2e-90 | A0A078GBE0_BRANA; BnaC08g43150D protein | ||||
STRING | Bra031629.1-P | 1e-88 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-74 | YABBY family protein |
Publications ? help Back to Top | |||
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