PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01151.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 142aa    MW: 16031.1 Da    PI: 10.9052
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01151.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY145.26.9e-45511863170
                    YABBY  63 ldeslkeelleelkveeenlksnvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrika 142
                              l++s  ++++++l++ +++++s v+++e  s+s+ss++     sen d+e+pr+pp   +  PekrqrvPsaynrfikeeiqrika
  Rsa1.0_01151.1_g00011.1   5 LHQSSPPPIHQDLQQPKQHITSSVTRKEWGSSSRSSNHYsttlSENVDREAPRMPPirLMAAPEKRQRVPSAYNRFIKEEIQRIKA 90 
                              556777889**********9999999887766666655444449***********9556789************************ PP

                    YABBY 143 snPdishreafsaaaknWahfPkihfgl 170
                              +nP ishreafs+aaknWahfP+ihfgl
  Rsa1.0_01151.1_g00011.1  91 GNPAISHREAFSTAAKNWAHFPHIHFGL 118
                              **************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.6E-4011118IPR006780YABBY protein
SuperFamilySSF470953.67E-762111IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-465112IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGVSLHQSSP PPIHQDLQQP KQHITSSVTR KEWGSSSRSS NHYSTTLSEN VDREAPRMPP  60
IRLMAAPEKR QRVPSAYNRF IKEEIQRIKA GNPAISHREA FSTAAKNWAH FPHIHFGLKL  120
DGNKKGKQLD QTVAGHKSNG YF
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01151.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533261e-157AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490561.11e-103PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB08e-79YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A078GBE02e-90A0A078GBE0_BRANA; BnaC08g43150D protein
STRINGBra031629.1-P1e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-74YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]