PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01151.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 339aa MW: 38689.1 Da PI: 8.5402 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2e-05 | 182 | 201 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Rsa1.0_01151.1_g00002.1 182 FACSICSKTFTRYNNMQMHM 201 78*****************9 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 267 | 289 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ Rsa1.0_01151.1_g00002.1 267 FSCGKCGKALAVKGDWRTHEKNC 289 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.29E-9 | 161 | 205 | No hit | No description |
SMART | SM00355 | 0.17 | 182 | 204 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.596 | 182 | 209 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-6 | 182 | 201 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 184 | 204 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 230 | 262 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.38E-5 | 252 | 287 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 253 | 287 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 190 | 267 | 287 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 180 | 293 | 316 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNLHEKGLTF KSSGFLAWLR ASSNSSSPSV LFPMKMKDVV SRSYHQSQMN ILERSLFLYQ 60 PQEPLNTNTT SIQCLPLLNK LMEDESQASD DIKEEIDDDV VTLQIGLPTY HRGNSVEDDS 120 DTTSEHHQKK SIKRERIEDG VVMMKKRIKM TFEQKMIDDM EVCGKRFWIP SPAQIHVGPM 180 QFACSICSKT FTRYNNMQMH MWGHGSEFRK GADSLKGTTQ PAAILRLPCY CCAEGCKNNI 240 NHPRAKPLKD FRTLQTHYKR KHGSKPFSCG KCGKALAVKG DWRTHEKNCG KLWYCTCGSD 300 FKHKRSLKDH IKSFGHGHSP HPSLSFDGFE EDTECVTTE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01151.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF254448 | 0.0 | AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds. | |||
GenBank | AK118851 | 0.0 | AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22. | |||
GenBank | AY090918 | 0.0 | AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018432797.1 | 0.0 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 0.0 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | M4ES43 | 0.0 | M4ES43_BRARP; Uncharacterized protein | ||||
STRING | Bra031621.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 0.0 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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