PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00867.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 593aa MW: 62259 Da PI: 8.6155

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00867.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.5e-09	200	229	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 r+rW++eEd l+ avk+ G g+W+ Iar Rsa1.0_00867.1_g00014.1 200 RKRWSAEEDADLIAAVKRCGEGNWAHIARG 229 89**************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.413	195	259	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-10	196	241	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-8	197	242	IPR009057	Homeodomain-like
SMART	SM00717	0.0014	199	250	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-7	200	228	IPR001005	SANT/Myb domain
CDD	cd11660	9.31E-11	201	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MVDSISSNKR RKRTISESDI ATLLQRYDAT TILRLLQEMA FYADVKMDWN ELVKKTATGI 60 TNAREYQMLW RHLSYRDPLL LPVDDDDAQP LDDDSDIECE LEASPPVSVE ASVEAIAHVK 120 VLAASYVPRE SDVLDESTSE APLTINIPYT LPHEPSDSPW LSRGMNITFP VCLQKPTPTA 180 TEGINGDGSA SISMASRKIR KRWSAEEDAD LIAAVKRCGE GNWAHIARGE FRGRRTASQL 240 SQTDYFILQR WPHLRKKYDT STSGSQPGVQ QTEAQIAVNH ALSLALGNRP PSKKVAVGTQ 300 GNGGRPAQGQ QQSKPVAVQT LSRAATTVPA SKSRLGVKKT TASSTFRSDL MVTANSAAAA 360 ACMGGVSTGP SVPKVESVEN ASTACMPCPS GSLVVPEVEP GKTVAASSIT KPVGPANARP 420 LANGNLKPVT PSPSSVIPPL TDGSALLSAS THLTTASKIV SSQRVSAASV PATVLPPKAT 480 AGTAICKPDG GHKEQAREDG ASSLVAIQSN NMISTNSETS RGKQAAAHAQ TAVLGAANQS 540 LVDKTAVPSI SGAGSKSKSK CEVNNNVGSL NKVSNACGEP TEVANVRGTG QGV

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MVDSISSNKR RKRTISESDI ATLLQRYDAT TILRLLQEMA FYADVKMDWN ELVKKTATGI  60
TNAREYQMLW RHLSYRDPLL LPVDDDDAQP LDDDSDIECE LEASPPVSVE ASVEAIAHVK  120
VLAASYVPRE SDVLDESTSE APLTINIPYT LPHEPSDSPW LSRGMNITFP VCLQKPTPTA  180
TEGINGDGSA SISMASRKIR KRWSAEEDAD LIAAVKRCGE GNWAHIARGE FRGRRTASQL  240
SQTDYFILQR WPHLRKKYDT STSGSQPGVQ QTEAQIAVNH ALSLALGNRP PSKKVAVGTQ  300
GNGGRPAQGQ QQSKPVAVQT LSRAATTVPA SKSRLGVKKT TASSTFRSDL MVTANSAAAA  360
ACMGGVSTGP SVPKVESVEN ASTACMPCPS GSLVVPEVEP GKTVAASSIT KPVGPANARP  420
LANGNLKPVT PSPSSVIPPL TDGSALLSAS THLTTASKIV SSQRVSAASV PATVLPPKAT  480
AGTAICKPDG GHKEQAREDG ASSLVAIQSN NMISTNSETS RGKQAAAHAQ TAVLGAANQS  540
LVDKTAVPSI SGAGSKSKSK CEVNNNVGSL NKVSNACGEP TEVANVRGTG QGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00867.1_g00014.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492336.1	0.0	PREDICTED: uncharacterized protein LOC108862637
TrEMBL	A0A0D3C8U4	0.0	A0A0D3C8U4_BRAOL; Uncharacterized protein
STRING	Bo5g010120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4823	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	0.0	MYB_related family protein