PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00556.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 546aa MW: 63008.3 Da PI: 4.4703 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.4 | 3.2e-24 | 6 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra.......t 78 p G rF+Pt+ lv++yLk+kve+++ + ik++++y Pw L++ ++ ++ewy+F++r + + +r+ Rsa1.0_00556.1_g00006.1 6 PGGSRFEPTELGLVKRYLKNKVEKNDSDS---IKTLNVYGDAPWLLHHDTNPlyARNEWYYFVPRTVRGVK--TVSRMvpgngesF 86 779**********************9665...**************85332233678*******9876543..4445423333334 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 g+Wk+ gk ke+++ ++el+g k++Lvf k+ + + ektdW m+ey+l Rsa1.0_00556.1_g00006.1 87 LGGTWKSVGKRKEIKK-NKELKGYKRVLVFNKNvaGKLEKEKTDWHMDEYSL 137 49*************9.999***********7532445568*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-28 | 4 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.607 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-16 | 7 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MATKYPGGSR FEPTELGLVK RYLKNKVEKN DSDSIKTLNV YGDAPWLLHH DTNPLYARNE 60 WYYFVPRTVR GVKTVSRMVP GNGESFLGGT WKSVGKRKEI KKNKELKGYK RVLVFNKNVA 120 GKLEKEKTDW HMDEYSLHKN GDEFHDLVLC HYSLHKNGDE FHDLVLCHVR LLNSAERFKP 180 LVPPAHQLDD NNDNHVLPNQ EQQEAGFAMQ EYKGGDVNQH QQQQEEEQED SRMPLQSNYN 240 QGQYLLEANV CQNDMMMLEN DRGYLNQHQH QQQQQQQQEQ EGSLILSHPP LEINNNQEPC 300 PSDDLAYHGA KDDMTGYGLM PNFNDANQQH EQQQDSPTLL HPPLQINDNQ EHHPLEDYAF 360 DGADDNVTFD IDELLNSLDE WKEQEDSPPS LLFPPLQSND NHGQCPPLVP SQVENHNNTV 420 VPNQEQREAL GFANQNDMPM IKKERGDDVE QQQQQQDQEQ LQKVLMSFLL APSWDTDFIF 480 DEADAEDDFI KEILDVHCTQ EQLQELEEEQ SKALQRVPQA QDSGVRADQV MPKESSQGFL 540 FTNTQT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00556.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470917.1 | 0.0 | PREDICTED: alpha-protein kinase 1-like | ||||
Refseq | XP_018470954.1 | 0.0 | PREDICTED: alpha-protein kinase 1 | ||||
TrEMBL | A0A3P6D889 | 1e-153 | A0A3P6D889_BRACM; Uncharacterized protein | ||||
STRING | Bra033406.1-P | 1e-151 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18837 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 3e-26 | NAC domain containing protein 6 |