PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00425.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 275aa MW: 31260.6 Da PI: 9.9334

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00425.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	51	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Rsa1.0_00425.1_g00014.1 51 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 95 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.47E-16	45	101	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.766	46	100	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.3E-17	49	98	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.7E-7	49	101	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-11	50	98	IPR001005	SANT/Myb domain
Pfam	PF00249	5.5E-12	51	95	IPR001005	SANT/Myb domain
CDD	cd00167	3.99E-9	53	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MNMNLSGFGT TLPHTTAPAT TMPVSARSQT MSFSEDLTKK IRKPYTITKS RENWTEQEHD 60 KFIEALHLFD RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTNEHLPP PRPKRKANHP 120 YPQKASKSVA LSTSNALLEH EYLYTTTHPQ PVICTPSHGL IRRGVITPNP VIKEESGVPE 180 NCCSTTSSSI RDNGQRTRTV TQTDDQKVMM PNFAQVYSFI GSVFDPQTTG HVQRLKQMDP 240 INLETVLLLM RNLSVNLTSP EFEEQRRFIS SYKGE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00425.1_g00014.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470171.1	0.0	PREDICTED: protein REVEILLE 3
Swissprot	Q6R0H0	1e-139	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A397XNJ2	1e-167	A0A397XNJ2_BRACM; Uncharacterized protein
TrEMBL	M4EWS2	1e-167	M4EWS2_BRARP; Uncharacterized protein
STRING	Bra033257.1-P	1e-168	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	1e-128	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]