PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00324.1_g00023.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 374aa    MW: 41095.6 Da    PI: 6.2759
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00324.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.4e-14232285359
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                              ++kr+rr+ +NRe+ArrsR+RK++++ e  + v +L +e ++L     +l+++ +k 
  Rsa1.0_00324.1_g00023.1 232 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVNQLRTEHSTLL---GRLTDMNQKY 285
                              68*****************************************9...5555555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-16230294IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-10231285No hitNo description
PROSITE profilePS5021710.76232286IPR004827Basic-leucine zipper domain
PfamPF001701.7E-11233285IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.54E-10234284No hitNo description
PROSITE patternPS000360237252IPR004827Basic-leucine zipper domain
PfamPF124981.6E-10301337IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MHIVFSVDDL TDSFWPPPPP EPSPSQQQNM PPDGMTRSQS EWAFQRLLRE MSASDESPTT  60
ISVRSPPPPV HSEQSLSTVD ETADVVEIQK PPPPRNPAVD DRNRARSSSD PLVSDCVDPN  120
QFRAILQSKL EIACAAVARR VGAVKPEDSS ASGVNQKLSP PPVGSQAQGS VVVAQTSPGA  180
SSVRSVPSTS VKKKPDVVVP ARQTTSISSR DDSDDDDLDG DTETADNGDP TDVKRARRML  240
SNRESARRSR RRKQEQMNEF DTQVNQLRTE HSTLLGRLTD MNQKYDAAAV DNRILRADIE  300
TLRTKVKMAE ETVKRVTGVN PLQWAGPNMG MPVNNTPRIP STTGAGLAPN QRVEVNREGT  360
PNLYEPMPHW NHKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246253RRSRRRKQ
2248253SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00324.1_g00023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432693.10.0PREDICTED: basic leucine zipper 25 isoform X2
SwissprotQ9M1G61e-142BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A0D3DT200.0A0A0D3DT20_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FW990.0A0A3P6FW99_BRAOL; Uncharacterized protein
STRINGBo8g084770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.11e-129basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]