PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00285.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 570aa MW: 63387.9 Da PI: 4.198 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 4.9e-53 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtdeelv +yLk+kv +k+++l ++i+ +d+yk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk Rsa1.0_00285.1_g00018.1 10 LAPGFRFHPTDEELVRYYLKRKVCNKPFKL-DAISVTDVYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYNNGSKTNRATEKGYWK 94 579***************************.99**************95347777888**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkd+e+ + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Rsa1.0_00285.1_g00018.1 95 TTGKDREIRN-GSRAVGMKKTLVYHKGRAPRGERTNWVMHEYRL 137 *********9.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-62 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.288 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MGRGSATSTL APGFRFHPTD EELVRYYLKR KVCNKPFKLD AISVTDVYKS EPWDLPDKSK 60 LKSRDLEWYF FSMLDKKYNN GSKTNRATEK GYWKTTGKDR EIRNGSRAVG MKKTLVYHKG 120 RAPRGERTNW VMHEYRLTDD ELKKTGAPQD AFVLCRIFQK SGTGPKNGEQ YGAPYLEEEW 180 EEDKMTFVPE QDALSSEVLA FDDDDVYLDI DDFDEKPENL VVYDAIPVEP NYFHGESSNN 240 VESGNYSDSG NYIQPENFAV DSGGCFEQPL EAFEEDQKPI IRDGSIQPCS MFPNEQSGCG 300 VQDESAVNLE TSNSNVFAGG NCYSDIPIDT NYIMPDDSFI DPSNNLPLGD DLFLETDELG 360 SALPDDFDFE DYLNFFDDVD AQNMTLDVSQ LLESEEAVPA QEGHDQIPSS EDLENEGTGG 420 KVVVEKDETG EGSSSKQDAD VVTDFDSASK YPFLKKAGQM CGATSSFASQ FQTKDARLHA 480 GQSSGSVHVT AGIIRISNTT LAADMGWSYD KNDNLNVVLS FGLVQQRDDG MSSSVNKTGV 540 PATRAMLIFL CLWVLLLSVS FKVATMVSAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-45 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-45 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-45 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-45 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-45 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-45 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00285.1_g00018.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018476112.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X2 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A078J3K9 | 0.0 | A0A078J3K9_BRANA; BnaC03g71220D protein | ||||
STRING | Bo3g002800.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |