PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00269.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 312aa    MW: 33796.7 Da    PI: 9.1617
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00269.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822217.92.3e-67111512145
                   DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas 87 
                              +sgr+ptwkErEnnkrRERrRRai+akiy+GLR qGnyklpk++DnneVlkALc eAGw+vedDGttyrkgskp+ ++++ g+ ++
  Rsa1.0_00269.1_g00015.1  11 SSGRTPTWKERENNKRRERRRRAITAKIYSGLRGQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGSKPP-ASDMLGTPTT 95 
                              89*************************************************************************.********** PP

                   DUF822  88 aspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                               s++ss+q s++ssa++sp++sy+ sp sssfpsps++d ++++    llp+l++ ++
  Rsa1.0_00269.1_g00015.1  96 FSTNSSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNPSS--YLLLPFLHNIAS 151
                              *****************************************987..899999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.4E-6211135IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAAGGGGGGS SSGRTPTWKE RENNKRRERR RRAITAKIYS GLRGQGNYKL PKHCDNNEVL  60
KALCLEAGWI VEDDGTTYRK GSKPPASDML GTPTTFSTNS SIQPSPQSSA FPSPAPSYHG  120
SPVSSSFPSP SRYDGNPSSY LLLPFLHNIA SSIPANLPPL RISNSAPVTP PLSSPTSRGS  180
KRKLMTQQLP TNGLRHPLFA ISAPSSPTRR AGHQTPPTIP ECDESEESSF EDSGRWINFQ  240
STAPSSPTFN LVNQTSMVID MKRSDWGISG MNMKGSEFEF ENGTVKPWEG EMIHEVGVED  300
LELTLGGTKT RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-251492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-251492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-251492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-251492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00269.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458488.10.0PREDICTED: BES1/BZR1 homolog protein 2
SwissprotQ94A431e-176BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLV4LS331e-175V4LS33_EUTSA; Uncharacterized protein
STRINGXP_006411962.11e-176(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.19e-86BES1/BZR1 homolog 2