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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00234.1_g00026.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MYB |
Protein Properties |
Length: 346aa MW: 39932 Da PI: 6.6123 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00234.1_g00026.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57.8 | 2.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl
Rsa1.0_00234.1_g00026.1 14 KGPWTSEEDQKLLDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++
Rsa1.0_00234.1_g00026.1 67 RGRFSFEEEEAIIQLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MGRSPCCEKN GLKKGPWTSE EDQKLLDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG 120 IDPTTHNPRL DLLDISSILA SSLYNSSSHH VNMSRVMMDA HHPQQHNPLV NPEILKFANS 180 LFSQDQDHNH NHNHNQNRNQ NFLVNHDSKT HENYTVNHDD NQTGVNQYQT NHHEIQYCLP 240 PFPDEAHFND TDHNGEHMFA SNSNMSVQDC NTASSSFVFD HSYLDHNFNI AYSVMNTPSS 300 NPTLNSSVTT YINSSSCSTE DEMESYCSNL MKFDISDFLD VNDFII
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY087252 | 1e-175 | AY087252.1 Arabidopsis thaliana clone 33333 mRNA, complete sequence. |
GenBank | AY519607 | 1e-175 | AY519607.1 Arabidopsis thaliana MYB transcription factor (At4g21440) mRNA, complete cds. |
GenBank | BT001235 | 1e-175 | BT001235.1 Arabidopsis thaliana myb-related protein M4 (At4g21440) mRNA, complete cds. |
GenBank | X90382 | 1e-175 | X90382.2 Arabidopsis thaliana mRNA for putative transcription factor (MYB102 gene). |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] - Zhu L,Guo J,Ma Z,Wang J,Zhou C
Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]
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