PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00201.1_g00038.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 490aa    MW: 54463.4 Da    PI: 5.574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00201.1_g00038.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14325371455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YIk+Lq
  Rsa1.0_00201.1_g00038.1 325 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 371
                              799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-5049236IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.01E-18320380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.536321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-15324375No hitNo description
PfamPF000102.8E-11325371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17325380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MNTRDVVGWE EEDRSVASAV LGNLASDFLT ANSASNQNLF LVMGTDDSLN EKLSRLVDCP  60
NSESFSWSYA IFWQQTVSRS GHQVLAWGDG CCREPKEQEE STFCYNRIEE EEMRWQYMRK  120
RVLQKLHRLF GGSDEDNYAL SLENVTATEM FFLASMYFFF NHGEGGPGRC YASGRHVWLS  180
DAVNSGSDYC FRSFMVKRAG IRTVVMVPTD AGVLELGSVW SLPENVELVK SVQGLFMRRV  240
KPPPLGVVHK LFGQELSSSN QVQENVSVVA VEDKNHKVKK ASCKETRPAS LLAGVVGGGT  300
ASVVEEKRPR KRGRKPANGR EEALNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL  360
GDAISYIKEL QEKVKIIEAE GVGTETTEAE ESREVVDIQA GEEEVVVRVI SPLESHPASR  420
IIQALRNSEV TESNLSLADE GTLFHTFVVK SNNGSDPLTK EKLIAAAYPQ TSLTQQLLLP  480
SSSSQVSGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-27319382265Transcription factor MYC2
5gnj_B5e-27319382265Transcription factor MYC2
5gnj_E5e-27319382265Transcription factor MYC2
5gnj_F5e-27319382265Transcription factor MYC2
5gnj_G5e-27319382265Transcription factor MYC2
5gnj_I5e-27319382265Transcription factor MYC2
5gnj_M5e-27319382265Transcription factor MYC2
5gnj_N5e-27319382265Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306314KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00201.1_g00038.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439865.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY81e-147AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A0D3BNS80.0A0A0D3BNS8_BRAOL; Uncharacterized protein
STRINGBo4g008180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-148ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]